AI for Health

A Methodology for Using Large Language Models to Create User-Friendly Applications for Medicaid Redetermination and Other Social Services

Sumanth Ratna, Bill Weeks, Juan M. Lavista Ferres, Aneesh Chopra, Mayana Pereira

International Journal of Public Health | August 2024

Publication Publication

Maternal Obesity and Risk of Sudden Unexpected Infant Death

Darren Tanner, Jan-Marino Ramirez, Bill Weeks, Juan M. Lavista Ferres, Edwin A. Mitchell

Jama Pediatrics | July 2024

Publication

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

PNAS | June 2024

Publication DOI

Bridging the rural‐urban divide: An implementation plan for leveraging technology and artificial intelligence to improve health and economic outcomes in rural America

Bill Weeks, Justin Spelhaug , James Weinstein, Juan M. Lavista Ferres

The Journal of Rural Health | March 2024

Publication DOI

Health and Wealth in America

Bill Weeks, Juan M. Lavista Ferres, James Weinstein

International Journal of Public Health | March 2024

Publication DOI

Improved estimation of the relationship between fetal growth and late stillbirth in the United States, 2014–15

Darren Tanner, Juan M. Lavista Ferres, Edwin A. Mitchell

Scientific Reports | March 2024

Publication PDF

Self-Supervised Learning for Improved Optical Coherence Tomography Detection of Macular Telangiectasia Type 2

Shahrzad Gholami, Lea Scheppke, Meghana Kshirsagar, Yue Wu, Rahul Dodhia, Roberto Bonelli, Irene Leung, Ferenc B. Sallo, Alyson Muldrew, Catherine Jamison, Tunde Peto, Juan M. Lavista Ferres, Bill Weeks, Martin Friedlander, Aaron Y. Lee

JAMA Ophthalmology | February 2024

Publication

Hospital use of common Z-codes for Medicare fee-for-service beneficiaries, 2017–2021

Ji E Chang, Nate Smith, Zoe Lindenfeld, Bill Weeks

Health Affairs Scholar | January 2024, Vol 2(1)

Publication DOI

All Sustainable Development Goals Support Good Health and Well-Being

Bill Weeks, James Weinstein, Juan M. Lavista Ferres

International Journal of Public Health | December 2023, Vol 68

Publication DOI

Parameter-Efficient Fine-Tuning of Protein Language Models Improves Prediction of Protein-Protein Interactions

Samuel Sledzieski, Meghana Kshirsagar, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

Machine Learning for Structural Biology Workshop, NeurIPS | December 2023

Publication

Towards an automated Segment Anything Model (SAM) for lesion segmentation in oncological PET/CT images

S. Ahamed, Yixi Xu, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, A. Rahmim

2023 IEEE Nuclear Science Symposium | December 2023

Publication DOI

HLA-genotype-based Predictive Diagnosis of T-cell Responses to SARS-CoV-2 Infection Powered by Machine Learning

Robert G. Lisziewicz, Felipe Oviedo, Andras G. Szasz, Juan M. Lavista Ferres, Franco Lori, Julianna Lisziewicz

European Society of Medicine | November 2023

Publication PDF DOI

Using Artificial Intelligence to Advance Public Health

Bill Weeks, Brian Taliesin, Juan M. Lavista Ferres

International Journal of Public Health (IJPH) | November 2023

Publication DOI

Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing

Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez

November 2023

Preprint

Rural-urban disparities in health outcomes, clinical care, health behaviors, and social determinants of health and an action-oriented, dynamic tool for visualizing them

Bill Weeks, Ji E. Chang, José A. Pagán, Jeffrey Lumpkin, Divya Michael, Santiago Salcido, Allen Kim, Peter Speyer, Ann Aerts, James N. Weinstein, Juan M. Lavista Ferres

PLOS Global Public Health | October 2023

Publication DOI Project

An observational, sequential analysis of the relationship between local economic distress and inequities in health outcomes, clinical care, health behaviors, and social determinants of health

Bill Weeks, Juan M. Lavista Ferres, Ji E Chang, José A Pagán, Ann Aerts,, James N Weinstein

International Journal for Equity in Health | September 2023

Publication PDF Project

Risk factors for late (28+ weeks’ gestation) stillbirth in the United States, 2014–2015

Darren Tanner, Sushama Murthy, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A. Mitchell

PLOS ONE | August 2023

Publication DOI

PSMA-Hornet: Fully-automated, multi-target segmentation of healthy organs in PSMA PET/CT images

Ivan S. Klyuzhin, Guillaume Chaussé, Ingrid Bloise, Sara Harsini, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

American Association of Physicists in Medicine | August 2023

Publication DOI

Interpretable Ensemble-based Deep Learning Approach for Automated Detection of Macular Telangiectasia Type 2 by Optical Coherence Tomography

Shahrzad Gholami, Lea Scheppke, Rahul Dodhia, Juan M. Lavista Ferres, Dr. Aaron Lee

ICML Workshop on Interpretable Machine Learning in Healthcare (IMLH 2023), Short Paper | July 2023

Publication PDF

Using data science and a health equity lens to identify long-COVID sequelae among medically underserved populations

Md Nasir, Nicole Cook, Daniel Parras, Sumit Mukherjee, Geralyn Miller, Juan M. Lavista Ferres, Katherine Chung-Bridges

Journal of Health Care for the Poor and Underserved | May 2023

Publication Project

Watching Innovation in Real Time: The Story of ChatGPT and Radiology

Elliot K. Fishman, Bill Weeks, Juan M. Lavista Ferres, Linda C. Chu

Canadian Association of Radiologists Journal | May 2023

Publication

Maternal infections in pregnancy and the risk of sudden unexpected infant death in the offspring in the US, 2011–2015

Maggie Weatherly, Anusua Trivedi, Ratna Chembrolu, Sanjana Gupta, Jan-Marino Ramirez, Juan M. Lavista Ferres, Tatiana M. Anderson, Edwin A. Mitchell

PLoS ONE | April 2023

Publication DOI

Evaluating the Generalizability of Deep Learning Image Classification Algorithms to Detect Middle Ear Disease Using Otoscopy

Al-Rahim Habib, Yixi Xu, Kris Bock, Shrestha Mohanty, Tina Sederholm, Bill Weeks, Rahul Dodhia, Juan M. Lavista Ferres, Chris Perry, Raymond Sacks, Narinder Singh

Scientific Reports | April 2023

Publication

Automatic segmentation of prostate cancer metastases in PSMA PET/CT images using deep neural networks with weighted batch-wise dice loss

Yixi Xu, Ivan Klyuzhin, Sara Harsini, Anthony Ortiz, Shun Zhang, François Bénard, Rahul Dodhia, Carlos F. Uribe, Arman Rahmim , Juan M. Lavista Ferres

Computers in Biology and Medicine | April 2023

Publication DOI Project

A slice classification neural network for automated classification of axial PET/CT slices from a multi-centric lymphoma dataset

Shadab Ahamed, Yixi Xu, Ingrid Bloise, Joo H. O., Carlos F. Uribe, Rahul Dodhia, Juan M. Lavista Ferres, Arman Rahmim

Medical Imaging 2023 | April 2023

Publication

AI as a Public Service

Juan M. Lavista Ferres, Elliot K. Fishman , Steven P. Rowe , Linda C. Chu , Elias Lugo-Fagundo

Journal of the American College of Radiology | March 2023

Publication

Beyond chatting: The opportunities and challenges of ChatGPT in medicine and radiology (Editorial)

Juan M. Lavista Ferres, Bill Weeks, Linda C. Chu , Steven P. Rowe, Elliot K. Fishman

Diagnostic and Interventional Imaging | March 2023

Publication DOI

Predicting the Locations of Cryptic Pockets from Single Protein Structures Using the PocketMiner Graph Neural Network

Artur Meller, Michael Ward, Jonathan Borowsky, Jeffrey M. Lotthammer, Meghana Kshirsagar, Felipe Oviedo, Juan M. Lavista Ferres, Gregory R. Bowman

Nature Communications | February 2023

Publication DOI

Identifying long-term effects of SARS-CoV-2 and their association with social determinants of health in a cohort of over one million COVID-19 survivors

Sumit Mukherjee, Meghana Kshirsagar, Nicholas Becker, Yixi Xu, Bill Weeks, Shwetak Patel, Juan M. Lavista Ferres, Michael L. Jackson

BMC Public Health | December 2022

Publication PDF Project

Novel data analytics identify predictors of quality-of-life trajectories in patients with AML or high-risk Myeloid Neoplasms

Jordan Gauthier, Bianca Furtuna, ,Jacopo Mangiavacchi, Shahrzad Gholami, Juan M. Lavista Ferres, Rahul Dodhia, Amir T. Fathi,, Andrew M. Brunner, Aaron T. Gerds, Mikkael A. Sekeres, Bruno C. Medeiros, Eunice S. Wang, Paul J Shami, Kehinde Adekola, Selina M. Luger, Maria R. Baer, David A Rizzieri, Tanya Wildes, Jamie L. Koprivnikar, Julie Smith, Mitchell A. Garrison, Kiarash Kojouri, Frederick R. Appelbaum, Mary-Elizabeth M. Percival, Stephanie J. Lee, Mohamed L. Sorror

Blood | November 2022

Publication

Factors Associated with the Intention to Receive the COVID-19 Vaccine: Cross-sectional National Study

Monica L Kasting , Jonathan T Macy , Shaun J Grannis , Ashley J Wiensch , Juan M. Lavista Ferres, Brian E Dixon

JMIR Public Health Surveillance | November 2022

Publication PDF Project

The Risk of Hospitalization and Mortality After Breakthrough SARS-CoV-2 Infection by Vaccine Type: Observational Study of Medical Claims Data

Meghana Kshirsagar, Md Nasir, Sumit Mukherjee, Nicholas Becker, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, Barbra Richardson

JMIR Public Health Surveillance | November 2022

Publication PDF Project

MACE: A Flexible Framework for Membership Privacy Estimation in Generative Models

Yixi Xu, Sumit Mukherjee, Xiyang Liu, Shruti Tople, Rahul Dodhia, Juan M. Lavista Ferres

Transactions on Machine Learning Research (TMLR) | October 2022

Publication Project

Machine Learning-based Derivation and External Validation of a Tool to Predict Death and Development of Organ Failure in Hospitalized Patients with COVID-19

Yixi Xu, Anusua Trivedi, Nicholas Becker, Marian Blazes, Juan M. Lavista Ferres, Dr. Aaron Lee, W Liles, Dr. Pavan Bhatraju

Scientific Reports | October 2022

Publication PDF Project

BindVAE: Dirichlet Variational Autoencoders for De Novo Motif Discovery from Accessible Chromatin

Meghana Kshirsagar, Han Yuan, Juan M. Lavista Ferres, Christina Leslie

Genome Biology | August 2022

Publication PDF Github

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features

Ivan S. Klyuzhin, Juan M. Lavista Ferres, Yixi Xu, Anthony Ortiz, Ghassan Hamarneh, Arman Rahmim

ScienceDirect | June 2022

Publication

T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity

Rebecca Elyanow, Thomas M. Snyder, Sudeb C. Dalai, Rachel M. Gittelman, Boonyaratanakornkit J, Wald A, Selke S, Wener Mh, Morishima C, Greninger Al, Michael Gale, Tien-Ying Hsiang, Lichen Jing, Holbrook Mr, Ian M. Kaplan, Damon H May, H. Jabran Zahid, Jonathan M. Carlson, Lance Baldo, Thomas Manley, Harlan S Robins, David M Koelle

JCI Insight | April 2022, Vol 7(10)

DOI Preprint Publication Project Project

Evaluation of Individual and Ensemble Probabilistic Forecasts of COVID-19 Mortality in the United States

EY Cramer, EL Ray, VK Lopez, J Bracher, A Brennen, [….], Juan M. Lavista Ferres

PNAS | April 2022

Publication PDF Project

Effective Deep Learning Approaches for Predicting COVID-19 Outcomes from Chest Computed Tomography Volumes

Anusua Trivedi, Anthony Ortiz, Caleb Robinson, Jocelyn Desbiens, Marian Blazes, Sunil Gupta, Rahul Dodhia, Pavan Bhatraju, W Conrad Liles, Aaron Lee, Juan M. Lavista Ferres

Nature Scientific Reports | February 2022

Publication PDF Project

Association of Public Health Measures During the COVID-19 Pandemic with the Incidence of Infectious Conjunctivitis

Juan M. Lavista Ferres, Thomas Meirick, Whitney Lomazow, Cecilia S. Lee, Aaron Y. Lee, Michele D. Lee

JAMA Ophthalmology | January 2022

Publication Project

Reimagining Leprosy Elimination with AI Analysis of a Combination of Skin Lesion Images with Demographic and Clinical Data

Raquel R Barbieri, Yixi Xu, Lucy Setian, Paulo Thiago Souza-Santos, Anusua Trivedi, Jim Cristofono, Ricardo Bhering, Kevin White, Anna M Sales, Geralyn Miller, José Augusto C Nery, Michael Sharman, Richard Bumann, Shun Zhang, Mohamad Goldust, Euzenir N Sarno, Fareed Mirza, Arielle Cavaliero, Sander Timmer, Elena Bonfiglioli, Cairns Smith, David Scollard, Alexander A Navarini, Ann Aerts, Juan M. Lavista Ferres, Milton O Moraes

Science Direct | January 2022

Publication PDF Project

Height Estimation of Children under Five Years using Depth Images

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan M. Lavista Ferres

IEEE Eng Med Biol Soc | November 2021

Publication Project

Retinal Microvasculature as Biomarker for Diabetes and Cardiovascular Diseases

Anusua Trivedi, Jocelyn Desbiens, Ron Gross, Sunil Gupta, Rahul Dodhia, Juan M. Lavista Ferres

July 2021

Accepted in KDD

Publication

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Height Estimation of Children under Five Years using Depth Images.

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan Lavista Ferres, Juan M. Lavista Ferres

IEEE International Engineering in Medicine and Biology Conference (EMBC) | May 2021

Publication Publication Publication Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

Automated Deep Segmentation of Healthy Organs in PSMA PET/CT Images

Ivan Klyuzhin, Guillaume Chausse, Ingrid Bloise, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Unsupervised Background Removal by Dual-Modality PET/CT Guidance: Application to PSMA Imaging of Metastases

Ivan Klyuzhin, Yixi Xu, Sara Harsini, Anthony Ortiz, Carlos Uribe, Juan M. Lavista Ferres, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Sudden Unexpected Postnatal Collapse Resulting in Newborn Death in the United States

Tatiana M Anderson, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A Mitchell

MCN American Journal of Maternal Child Nursing (In Advance) | February 2021

Publication PDF

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 —human interactome

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman , Judith Klein-Seetharaman

Pacific Symposium on Biocomputing | January 2021

Publication Project

Using Internet Search Trends to Forecast Short-term Drug Overdose Deaths: A Case Study on Connecticut

Sumit Mukherjee, Nicholas Becker, Bill Weeks, Juan M. Lavista Ferres

IEEE International Conference on Machine Learning and Applications (ICMLA) | December 2020

Publication

P0: Progress to zero: A simple metric to measure COVID-19 progress by country/region

Juan M. Lavista Ferres, Ruth B Etzioni, Bill Weeks

May 2020

DOI Preprint Project

Geographic Variation in Sudden Unexpected Infant Death in the United States

Edwin A.Mitchell, Xiaohan Yan, Shirley You Ren, Tatiana M. Anderson, Jan-Marino Ramirez, Juan M. Lavista Ferres, Richard Johnston

The Journal of Pediatrics | February 2020, Vol 220: pp. 49-55

Publication DOI

Distinct populations of sudden unexpected infant death based on age

Juan M. Lavista Ferres, Tatiana M. Anderson, Richard Johnston, Jan-Marino Ramirez , Edwin A. Mitchell

Pediatrics | January 2020, Vol 145(1)

PDF DOI Video

Binary Mode Multinomial Deep Learning Model for more efficient Automated Diabetic Retinopathy Detection

Anusua Trivedi, J. Desbiens, Ron Gross, S. Gupta, Juan M. Lavista Ferres, Rahul Dodhia

NeurIPS 2019 | December 2019

PDF

Maternal smoking before and during pregnancy and the risk of sudden unexpected infant death

Tatiana M. Anderson, Juan M. Lavista Ferres, Shirley You Ren, Rachel Y. Moon, Richard D. Goldstein, Jan-Marino Ramirez, Edwin A. Mitchell

Pediatrics | April 2019, Vol 143(4)

Publication PDF

A Methodology for Using Large Language Models to Create User-Friendly Applications for Medicaid Redetermination and Other Social Services

Sumanth Ratna, Bill Weeks, Juan M. Lavista Ferres, Aneesh Chopra, Mayana Pereira

International Journal of Public Health | August 2024

Publication Publication

Maternal Obesity and Risk of Sudden Unexpected Infant Death

Darren Tanner, Jan-Marino Ramirez, Bill Weeks, Juan M. Lavista Ferres, Edwin A. Mitchell

Jama Pediatrics | July 2024

Publication

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

PNAS | June 2024

Publication DOI

Bridging the rural‐urban divide: An implementation plan for leveraging technology and artificial intelligence to improve health and economic outcomes in rural America

Bill Weeks, Justin Spelhaug , James Weinstein, Juan M. Lavista Ferres

The Journal of Rural Health | March 2024

Publication DOI

Health and Wealth in America

Bill Weeks, Juan M. Lavista Ferres, James Weinstein

International Journal of Public Health | March 2024

Publication DOI

Improved estimation of the relationship between fetal growth and late stillbirth in the United States, 2014–15

Darren Tanner, Juan M. Lavista Ferres, Edwin A. Mitchell

Scientific Reports | March 2024

Publication PDF

Self-Supervised Learning for Improved Optical Coherence Tomography Detection of Macular Telangiectasia Type 2

Shahrzad Gholami, Lea Scheppke, Meghana Kshirsagar, Yue Wu, Rahul Dodhia, Roberto Bonelli, Irene Leung, Ferenc B. Sallo, Alyson Muldrew, Catherine Jamison, Tunde Peto, Juan M. Lavista Ferres, Bill Weeks, Martin Friedlander, Aaron Y. Lee

JAMA Ophthalmology | February 2024

Publication

Hospital use of common Z-codes for Medicare fee-for-service beneficiaries, 2017–2021

Ji E Chang, Nate Smith, Zoe Lindenfeld, Bill Weeks

Health Affairs Scholar | January 2024, Vol 2(1)

Publication DOI

Parameter-Efficient Fine-Tuning of Protein Language Models Improves Prediction of Protein-Protein Interactions

Samuel Sledzieski, Meghana Kshirsagar, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

Machine Learning for Structural Biology Workshop, NeurIPS | December 2023

Publication

Towards an automated Segment Anything Model (SAM) for lesion segmentation in oncological PET/CT images

S. Ahamed, Yixi Xu, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, A. Rahmim

2023 IEEE Nuclear Science Symposium | December 2023

Publication DOI

HLA-genotype-based Predictive Diagnosis of T-cell Responses to SARS-CoV-2 Infection Powered by Machine Learning

Robert G. Lisziewicz, Felipe Oviedo, Andras G. Szasz, Juan M. Lavista Ferres, Franco Lori, Julianna Lisziewicz

European Society of Medicine | November 2023

Publication PDF DOI

Using Artificial Intelligence to Advance Public Health

Bill Weeks, Brian Taliesin, Juan M. Lavista Ferres

International Journal of Public Health (IJPH) | November 2023

Publication DOI

Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing

Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez

November 2023

Preprint

Rural-urban disparities in health outcomes, clinical care, health behaviors, and social determinants of health and an action-oriented, dynamic tool for visualizing them

Bill Weeks, Ji E. Chang, José A. Pagán, Jeffrey Lumpkin, Divya Michael, Santiago Salcido, Allen Kim, Peter Speyer, Ann Aerts, James N. Weinstein, Juan M. Lavista Ferres

PLOS Global Public Health | October 2023

Publication DOI Project

An observational, sequential analysis of the relationship between local economic distress and inequities in health outcomes, clinical care, health behaviors, and social determinants of health

Bill Weeks, Juan M. Lavista Ferres, Ji E Chang, José A Pagán, Ann Aerts,, James N Weinstein

International Journal for Equity in Health | September 2023

Publication PDF Project

Risk factors for late (28+ weeks’ gestation) stillbirth in the United States, 2014–2015

Darren Tanner, Sushama Murthy, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A. Mitchell

PLOS ONE | August 2023

Publication DOI

PSMA-Hornet: Fully-automated, multi-target segmentation of healthy organs in PSMA PET/CT images

Ivan S. Klyuzhin, Guillaume Chaussé, Ingrid Bloise, Sara Harsini, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

American Association of Physicists in Medicine | August 2023

Publication DOI

Interpretable Ensemble-based Deep Learning Approach for Automated Detection of Macular Telangiectasia Type 2 by Optical Coherence Tomography

Shahrzad Gholami, Lea Scheppke, Rahul Dodhia, Juan M. Lavista Ferres, Dr. Aaron Lee

ICML Workshop on Interpretable Machine Learning in Healthcare (IMLH 2023), Short Paper | July 2023

Publication PDF

Using data science and a health equity lens to identify long-COVID sequelae among medically underserved populations

Md Nasir, Nicole Cook, Daniel Parras, Sumit Mukherjee, Geralyn Miller, Juan M. Lavista Ferres, Katherine Chung-Bridges

Journal of Health Care for the Poor and Underserved | May 2023

Publication Project

Watching Innovation in Real Time: The Story of ChatGPT and Radiology

Elliot K. Fishman, Bill Weeks, Juan M. Lavista Ferres, Linda C. Chu

Canadian Association of Radiologists Journal | May 2023

Publication

Evaluating the Generalizability of Deep Learning Image Classification Algorithms to Detect Middle Ear Disease Using Otoscopy

Al-Rahim Habib, Yixi Xu, Kris Bock, Shrestha Mohanty, Tina Sederholm, Bill Weeks, Rahul Dodhia, Juan M. Lavista Ferres, Chris Perry, Raymond Sacks, Narinder Singh

Scientific Reports | April 2023

Publication

Automatic segmentation of prostate cancer metastases in PSMA PET/CT images using deep neural networks with weighted batch-wise dice loss

Yixi Xu, Ivan Klyuzhin, Sara Harsini, Anthony Ortiz, Shun Zhang, François Bénard, Rahul Dodhia, Carlos F. Uribe, Arman Rahmim , Juan M. Lavista Ferres

Computers in Biology and Medicine | April 2023

Publication DOI Project

A slice classification neural network for automated classification of axial PET/CT slices from a multi-centric lymphoma dataset

Shadab Ahamed, Yixi Xu, Ingrid Bloise, Joo H. O., Carlos F. Uribe, Rahul Dodhia, Juan M. Lavista Ferres, Arman Rahmim

Medical Imaging 2023 | April 2023

Publication

AI as a Public Service

Juan M. Lavista Ferres, Elliot K. Fishman , Steven P. Rowe , Linda C. Chu , Elias Lugo-Fagundo

Journal of the American College of Radiology | March 2023

Publication

Beyond chatting: The opportunities and challenges of ChatGPT in medicine and radiology (Editorial)

Juan M. Lavista Ferres, Bill Weeks, Linda C. Chu , Steven P. Rowe, Elliot K. Fishman

Diagnostic and Interventional Imaging | March 2023

Publication DOI

Novel data analytics identify predictors of quality-of-life trajectories in patients with AML or high-risk Myeloid Neoplasms

Jordan Gauthier, Bianca Furtuna, ,Jacopo Mangiavacchi, Shahrzad Gholami, Juan M. Lavista Ferres, Rahul Dodhia, Amir T. Fathi,, Andrew M. Brunner, Aaron T. Gerds, Mikkael A. Sekeres, Bruno C. Medeiros, Eunice S. Wang, Paul J Shami, Kehinde Adekola, Selina M. Luger, Maria R. Baer, David A Rizzieri, Tanya Wildes, Jamie L. Koprivnikar, Julie Smith, Mitchell A. Garrison, Kiarash Kojouri, Frederick R. Appelbaum, Mary-Elizabeth M. Percival, Stephanie J. Lee, Mohamed L. Sorror

Blood | November 2022

Publication

Factors Associated with the Intention to Receive the COVID-19 Vaccine: Cross-sectional National Study

Monica L Kasting , Jonathan T Macy , Shaun J Grannis , Ashley J Wiensch , Juan M. Lavista Ferres, Brian E Dixon

JMIR Public Health Surveillance | November 2022

Publication PDF Project

The Risk of Hospitalization and Mortality After Breakthrough SARS-CoV-2 Infection by Vaccine Type: Observational Study of Medical Claims Data

Meghana Kshirsagar, Md Nasir, Sumit Mukherjee, Nicholas Becker, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, Barbra Richardson

JMIR Public Health Surveillance | November 2022

Publication PDF Project

MACE: A Flexible Framework for Membership Privacy Estimation in Generative Models

Yixi Xu, Sumit Mukherjee, Xiyang Liu, Shruti Tople, Rahul Dodhia, Juan M. Lavista Ferres

Transactions on Machine Learning Research (TMLR) | October 2022

Publication Project

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features

Ivan S. Klyuzhin, Juan M. Lavista Ferres, Yixi Xu, Anthony Ortiz, Ghassan Hamarneh, Arman Rahmim

ScienceDirect | June 2022

Publication

Association of Public Health Measures During the COVID-19 Pandemic with the Incidence of Infectious Conjunctivitis

Juan M. Lavista Ferres, Thomas Meirick, Whitney Lomazow, Cecilia S. Lee, Aaron Y. Lee, Michele D. Lee

JAMA Ophthalmology | January 2022

Publication Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Height Estimation of Children under Five Years using Depth Images.

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan Lavista Ferres, Juan M. Lavista Ferres

IEEE International Engineering in Medicine and Biology Conference (EMBC) | May 2021

Publication Publication Publication Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

Unsupervised Background Removal by Dual-Modality PET/CT Guidance: Application to PSMA Imaging of Metastases

Ivan Klyuzhin, Yixi Xu, Sara Harsini, Anthony Ortiz, Carlos Uribe, Juan M. Lavista Ferres, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Automated Deep Segmentation of Healthy Organs in PSMA PET/CT Images

Ivan Klyuzhin, Guillaume Chausse, Ingrid Bloise, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Sudden Unexpected Postnatal Collapse Resulting in Newborn Death in the United States

Tatiana M Anderson, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A Mitchell

MCN American Journal of Maternal Child Nursing (In Advance) | February 2021

Publication PDF

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 —human interactome

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman , Judith Klein-Seetharaman

Pacific Symposium on Biocomputing | January 2021

Publication Project

Using Internet Search Trends to Forecast Short-term Drug Overdose Deaths: A Case Study on Connecticut

Sumit Mukherjee, Nicholas Becker, Bill Weeks, Juan M. Lavista Ferres

IEEE International Conference on Machine Learning and Applications (ICMLA) | December 2020

Publication

A Methodology for Using Large Language Models to Create User-Friendly Applications for Medicaid Redetermination and Other Social Services

Sumanth Ratna, Bill Weeks, Juan M. Lavista Ferres, Aneesh Chopra, Mayana Pereira

International Journal of Public Health | August 2024

Publication Publication

Maternal Obesity and Risk of Sudden Unexpected Infant Death

Darren Tanner, Jan-Marino Ramirez, Bill Weeks, Juan M. Lavista Ferres, Edwin A. Mitchell

Jama Pediatrics | July 2024

Publication

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

PNAS | June 2024

Publication DOI

Bridging the rural‐urban divide: An implementation plan for leveraging technology and artificial intelligence to improve health and economic outcomes in rural America

Bill Weeks, Justin Spelhaug , James Weinstein, Juan M. Lavista Ferres

The Journal of Rural Health | March 2024

Publication DOI

Health and Wealth in America

Bill Weeks, Juan M. Lavista Ferres, James Weinstein

International Journal of Public Health | March 2024

Publication DOI

Improved estimation of the relationship between fetal growth and late stillbirth in the United States, 2014–15

Darren Tanner, Juan M. Lavista Ferres, Edwin A. Mitchell

Scientific Reports | March 2024

Publication PDF

Self-Supervised Learning for Improved Optical Coherence Tomography Detection of Macular Telangiectasia Type 2

Shahrzad Gholami, Lea Scheppke, Meghana Kshirsagar, Yue Wu, Rahul Dodhia, Roberto Bonelli, Irene Leung, Ferenc B. Sallo, Alyson Muldrew, Catherine Jamison, Tunde Peto, Juan M. Lavista Ferres, Bill Weeks, Martin Friedlander, Aaron Y. Lee

JAMA Ophthalmology | February 2024

Publication

Hospital use of common Z-codes for Medicare fee-for-service beneficiaries, 2017–2021

Ji E Chang, Nate Smith, Zoe Lindenfeld, Bill Weeks

Health Affairs Scholar | January 2024, Vol 2(1)

Publication DOI

All Sustainable Development Goals Support Good Health and Well-Being

Bill Weeks, James Weinstein, Juan M. Lavista Ferres

International Journal of Public Health | December 2023, Vol 68

Publication DOI

Parameter-Efficient Fine-Tuning of Protein Language Models Improves Prediction of Protein-Protein Interactions

Samuel Sledzieski, Meghana Kshirsagar, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

Machine Learning for Structural Biology Workshop, NeurIPS | December 2023

Publication

Towards an automated Segment Anything Model (SAM) for lesion segmentation in oncological PET/CT images

S. Ahamed, Yixi Xu, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, A. Rahmim

2023 IEEE Nuclear Science Symposium | December 2023

Publication DOI

Using Artificial Intelligence to Advance Public Health

Bill Weeks, Brian Taliesin, Juan M. Lavista Ferres

International Journal of Public Health (IJPH) | November 2023

Publication DOI

Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing

Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez

November 2023

Preprint

Rural-urban disparities in health outcomes, clinical care, health behaviors, and social determinants of health and an action-oriented, dynamic tool for visualizing them

Bill Weeks, Ji E. Chang, José A. Pagán, Jeffrey Lumpkin, Divya Michael, Santiago Salcido, Allen Kim, Peter Speyer, Ann Aerts, James N. Weinstein, Juan M. Lavista Ferres

PLOS Global Public Health | October 2023

Publication DOI Project

An observational, sequential analysis of the relationship between local economic distress and inequities in health outcomes, clinical care, health behaviors, and social determinants of health

Bill Weeks, Juan M. Lavista Ferres, Ji E Chang, José A Pagán, Ann Aerts,, James N Weinstein

International Journal for Equity in Health | September 2023

Publication PDF Project

Risk factors for late (28+ weeks’ gestation) stillbirth in the United States, 2014–2015

Darren Tanner, Sushama Murthy, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A. Mitchell

PLOS ONE | August 2023

Publication DOI

PSMA-Hornet: Fully-automated, multi-target segmentation of healthy organs in PSMA PET/CT images

Ivan S. Klyuzhin, Guillaume Chaussé, Ingrid Bloise, Sara Harsini, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

American Association of Physicists in Medicine | August 2023

Publication DOI

Interpretable Ensemble-based Deep Learning Approach for Automated Detection of Macular Telangiectasia Type 2 by Optical Coherence Tomography

Shahrzad Gholami, Lea Scheppke, Rahul Dodhia, Juan M. Lavista Ferres, Dr. Aaron Lee

ICML Workshop on Interpretable Machine Learning in Healthcare (IMLH 2023), Short Paper | July 2023

Publication PDF

Using data science and a health equity lens to identify long-COVID sequelae among medically underserved populations

Md Nasir, Nicole Cook, Daniel Parras, Sumit Mukherjee, Geralyn Miller, Juan M. Lavista Ferres, Katherine Chung-Bridges

Journal of Health Care for the Poor and Underserved | May 2023

Publication Project

Watching Innovation in Real Time: The Story of ChatGPT and Radiology

Elliot K. Fishman, Bill Weeks, Juan M. Lavista Ferres, Linda C. Chu

Canadian Association of Radiologists Journal | May 2023

Publication

Maternal infections in pregnancy and the risk of sudden unexpected infant death in the offspring in the US, 2011–2015

Maggie Weatherly, Anusua Trivedi, Ratna Chembrolu, Sanjana Gupta, Jan-Marino Ramirez, Juan M. Lavista Ferres, Tatiana M. Anderson, Edwin A. Mitchell

PLoS ONE | April 2023

Publication DOI

Evaluating the Generalizability of Deep Learning Image Classification Algorithms to Detect Middle Ear Disease Using Otoscopy

Al-Rahim Habib, Yixi Xu, Kris Bock, Shrestha Mohanty, Tina Sederholm, Bill Weeks, Rahul Dodhia, Juan M. Lavista Ferres, Chris Perry, Raymond Sacks, Narinder Singh

Scientific Reports | April 2023

Publication

Automatic segmentation of prostate cancer metastases in PSMA PET/CT images using deep neural networks with weighted batch-wise dice loss

Yixi Xu, Ivan Klyuzhin, Sara Harsini, Anthony Ortiz, Shun Zhang, François Bénard, Rahul Dodhia, Carlos F. Uribe, Arman Rahmim , Juan M. Lavista Ferres

Computers in Biology and Medicine | April 2023

Publication DOI Project

A slice classification neural network for automated classification of axial PET/CT slices from a multi-centric lymphoma dataset

Shadab Ahamed, Yixi Xu, Ingrid Bloise, Joo H. O., Carlos F. Uribe, Rahul Dodhia, Juan M. Lavista Ferres, Arman Rahmim

Medical Imaging 2023 | April 2023

Publication

AI as a Public Service

Juan M. Lavista Ferres, Elliot K. Fishman , Steven P. Rowe , Linda C. Chu , Elias Lugo-Fagundo

Journal of the American College of Radiology | March 2023

Publication

Beyond chatting: The opportunities and challenges of ChatGPT in medicine and radiology (Editorial)

Juan M. Lavista Ferres, Bill Weeks, Linda C. Chu , Steven P. Rowe, Elliot K. Fishman

Diagnostic and Interventional Imaging | March 2023

Publication DOI

Predicting the Locations of Cryptic Pockets from Single Protein Structures Using the PocketMiner Graph Neural Network

Artur Meller, Michael Ward, Jonathan Borowsky, Jeffrey M. Lotthammer, Meghana Kshirsagar, Felipe Oviedo, Juan M. Lavista Ferres, Gregory R. Bowman

Nature Communications | February 2023

Publication DOI

Identifying long-term effects of SARS-CoV-2 and their association with social determinants of health in a cohort of over one million COVID-19 survivors

Sumit Mukherjee, Meghana Kshirsagar, Nicholas Becker, Yixi Xu, Bill Weeks, Shwetak Patel, Juan M. Lavista Ferres, Michael L. Jackson

BMC Public Health | December 2022

Publication PDF Project

Novel data analytics identify predictors of quality-of-life trajectories in patients with AML or high-risk Myeloid Neoplasms

Jordan Gauthier, Bianca Furtuna, ,Jacopo Mangiavacchi, Shahrzad Gholami, Juan M. Lavista Ferres, Rahul Dodhia, Amir T. Fathi,, Andrew M. Brunner, Aaron T. Gerds, Mikkael A. Sekeres, Bruno C. Medeiros, Eunice S. Wang, Paul J Shami, Kehinde Adekola, Selina M. Luger, Maria R. Baer, David A Rizzieri, Tanya Wildes, Jamie L. Koprivnikar, Julie Smith, Mitchell A. Garrison, Kiarash Kojouri, Frederick R. Appelbaum, Mary-Elizabeth M. Percival, Stephanie J. Lee, Mohamed L. Sorror

Blood | November 2022

Publication

Factors Associated with the Intention to Receive the COVID-19 Vaccine: Cross-sectional National Study

Monica L Kasting , Jonathan T Macy , Shaun J Grannis , Ashley J Wiensch , Juan M. Lavista Ferres, Brian E Dixon

JMIR Public Health Surveillance | November 2022

Publication PDF Project

The Risk of Hospitalization and Mortality After Breakthrough SARS-CoV-2 Infection by Vaccine Type: Observational Study of Medical Claims Data

Meghana Kshirsagar, Md Nasir, Sumit Mukherjee, Nicholas Becker, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, Barbra Richardson

JMIR Public Health Surveillance | November 2022

Publication PDF Project

Machine Learning-based Derivation and External Validation of a Tool to Predict Death and Development of Organ Failure in Hospitalized Patients with COVID-19

Yixi Xu, Anusua Trivedi, Nicholas Becker, Marian Blazes, Juan M. Lavista Ferres, Dr. Aaron Lee, W Liles, Dr. Pavan Bhatraju

Scientific Reports | October 2022

Publication PDF Project

BindVAE: Dirichlet Variational Autoencoders for De Novo Motif Discovery from Accessible Chromatin

Meghana Kshirsagar, Han Yuan, Juan M. Lavista Ferres, Christina Leslie

Genome Biology | August 2022

Publication PDF Github

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features

Ivan S. Klyuzhin, Juan M. Lavista Ferres, Yixi Xu, Anthony Ortiz, Ghassan Hamarneh, Arman Rahmim

ScienceDirect | June 2022

Publication

T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity

Rebecca Elyanow, Thomas M. Snyder, Sudeb C. Dalai, Rachel M. Gittelman, Boonyaratanakornkit J, Wald A, Selke S, Wener Mh, Morishima C, Greninger Al, Michael Gale, Tien-Ying Hsiang, Lichen Jing, Holbrook Mr, Ian M. Kaplan, Damon H May, H. Jabran Zahid, Jonathan M. Carlson, Lance Baldo, Thomas Manley, Harlan S Robins, David M Koelle

JCI Insight | April 2022, Vol 7(10)

DOI Preprint Publication Project Project

Evaluation of Individual and Ensemble Probabilistic Forecasts of COVID-19 Mortality in the United States

EY Cramer, EL Ray, VK Lopez, J Bracher, A Brennen, [….], Juan M. Lavista Ferres

PNAS | April 2022

Publication PDF Project

Effective Deep Learning Approaches for Predicting COVID-19 Outcomes from Chest Computed Tomography Volumes

Anusua Trivedi, Anthony Ortiz, Caleb Robinson, Jocelyn Desbiens, Marian Blazes, Sunil Gupta, Rahul Dodhia, Pavan Bhatraju, W Conrad Liles, Aaron Lee, Juan M. Lavista Ferres

Nature Scientific Reports | February 2022

Publication PDF Project

Association of Public Health Measures During the COVID-19 Pandemic with the Incidence of Infectious Conjunctivitis

Juan M. Lavista Ferres, Thomas Meirick, Whitney Lomazow, Cecilia S. Lee, Aaron Y. Lee, Michele D. Lee

JAMA Ophthalmology | January 2022

Publication Project

Reimagining Leprosy Elimination with AI Analysis of a Combination of Skin Lesion Images with Demographic and Clinical Data

Raquel R Barbieri, Yixi Xu, Lucy Setian, Paulo Thiago Souza-Santos, Anusua Trivedi, Jim Cristofono, Ricardo Bhering, Kevin White, Anna M Sales, Geralyn Miller, José Augusto C Nery, Michael Sharman, Richard Bumann, Shun Zhang, Mohamad Goldust, Euzenir N Sarno, Fareed Mirza, Arielle Cavaliero, Sander Timmer, Elena Bonfiglioli, Cairns Smith, David Scollard, Alexander A Navarini, Ann Aerts, Juan M. Lavista Ferres, Milton O Moraes

Science Direct | January 2022

Publication PDF Project

Height Estimation of Children under Five Years using Depth Images

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan M. Lavista Ferres

IEEE Eng Med Biol Soc | November 2021

Publication Project

Retinal Microvasculature as Biomarker for Diabetes and Cardiovascular Diseases

Anusua Trivedi, Jocelyn Desbiens, Ron Gross, Sunil Gupta, Rahul Dodhia, Juan M. Lavista Ferres

July 2021

Accepted in KDD

Publication

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

Unsupervised Background Removal by Dual-Modality PET/CT Guidance: Application to PSMA Imaging of Metastases

Ivan Klyuzhin, Yixi Xu, Sara Harsini, Anthony Ortiz, Carlos Uribe, Juan M. Lavista Ferres, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Automated Deep Segmentation of Healthy Organs in PSMA PET/CT Images

Ivan Klyuzhin, Guillaume Chausse, Ingrid Bloise, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Sudden Unexpected Postnatal Collapse Resulting in Newborn Death in the United States

Tatiana M Anderson, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A Mitchell

MCN American Journal of Maternal Child Nursing (In Advance) | February 2021

Publication PDF

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 —human interactome

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman , Judith Klein-Seetharaman

Pacific Symposium on Biocomputing | January 2021

Publication Project

Using Internet Search Trends to Forecast Short-term Drug Overdose Deaths: A Case Study on Connecticut

Sumit Mukherjee, Nicholas Becker, Bill Weeks, Juan M. Lavista Ferres

IEEE International Conference on Machine Learning and Applications (ICMLA) | December 2020

Publication

P0: Progress to zero: A simple metric to measure COVID-19 progress by country/region

Juan M. Lavista Ferres, Ruth B Etzioni, Bill Weeks

May 2020

DOI Preprint Project

Geographic Variation in Sudden Unexpected Infant Death in the United States

Edwin A.Mitchell, Xiaohan Yan, Shirley You Ren, Tatiana M. Anderson, Jan-Marino Ramirez, Juan M. Lavista Ferres, Richard Johnston

The Journal of Pediatrics | February 2020, Vol 220: pp. 49-55

Publication DOI

Distinct populations of sudden unexpected infant death based on age

Juan M. Lavista Ferres, Tatiana M. Anderson, Richard Johnston, Jan-Marino Ramirez , Edwin A. Mitchell

Pediatrics | January 2020, Vol 145(1)

PDF DOI Video

Binary Mode Multinomial Deep Learning Model for more efficient Automated Diabetic Retinopathy Detection

Anusua Trivedi, J. Desbiens, Ron Gross, S. Gupta, Juan M. Lavista Ferres, Rahul Dodhia

NeurIPS 2019 | December 2019

PDF

Maternal smoking before and during pregnancy and the risk of sudden unexpected infant death

Tatiana M. Anderson, Juan M. Lavista Ferres, Shirley You Ren, Rachel Y. Moon, Richard D. Goldstein, Jan-Marino Ramirez, Edwin A. Mitchell

Pediatrics | April 2019, Vol 143(4)

Publication PDF

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Height Estimation of Children under Five Years using Depth Images.

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan Lavista Ferres, Juan M. Lavista Ferres

IEEE International Engineering in Medicine and Biology Conference (EMBC) | May 2021

Publication Publication Publication Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

MACE: A Flexible Framework for Membership Privacy Estimation in Generative Models

Yixi Xu, Sumit Mukherjee, Xiyang Liu, Shruti Tople, Rahul Dodhia, Juan M. Lavista Ferres

Transactions on Machine Learning Research (TMLR) | October 2022

Publication Project

A Methodology for Using Large Language Models to Create User-Friendly Applications for Medicaid Redetermination and Other Social Services

Sumanth Ratna, Bill Weeks, Juan M. Lavista Ferres, Aneesh Chopra, Mayana Pereira

International Journal of Public Health | August 2024

Publication Publication

Maternal Obesity and Risk of Sudden Unexpected Infant Death

Darren Tanner, Jan-Marino Ramirez, Bill Weeks, Juan M. Lavista Ferres, Edwin A. Mitchell

Jama Pediatrics | July 2024

Publication

Democratizing Protein Language Models with Parameter-Efficient Fine-Tuning

Samuel Sledzieski, Meghana Kshirsagar, Minkyung Baek, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

PNAS | June 2024

Publication DOI

Bridging the rural‐urban divide: An implementation plan for leveraging technology and artificial intelligence to improve health and economic outcomes in rural America

Bill Weeks, Justin Spelhaug , James Weinstein, Juan M. Lavista Ferres

The Journal of Rural Health | March 2024

Publication DOI

Health and Wealth in America

Bill Weeks, Juan M. Lavista Ferres, James Weinstein

International Journal of Public Health | March 2024

Publication DOI

Improved estimation of the relationship between fetal growth and late stillbirth in the United States, 2014–15

Darren Tanner, Juan M. Lavista Ferres, Edwin A. Mitchell

Scientific Reports | March 2024

Publication PDF

Self-Supervised Learning for Improved Optical Coherence Tomography Detection of Macular Telangiectasia Type 2

Shahrzad Gholami, Lea Scheppke, Meghana Kshirsagar, Yue Wu, Rahul Dodhia, Roberto Bonelli, Irene Leung, Ferenc B. Sallo, Alyson Muldrew, Catherine Jamison, Tunde Peto, Juan M. Lavista Ferres, Bill Weeks, Martin Friedlander, Aaron Y. Lee

JAMA Ophthalmology | February 2024

Publication

Hospital use of common Z-codes for Medicare fee-for-service beneficiaries, 2017–2021

Ji E Chang, Nate Smith, Zoe Lindenfeld, Bill Weeks

Health Affairs Scholar | January 2024, Vol 2(1)

Publication DOI

All Sustainable Development Goals Support Good Health and Well-Being

Bill Weeks, James Weinstein, Juan M. Lavista Ferres

International Journal of Public Health | December 2023, Vol 68

Publication DOI

HLA-genotype-based Predictive Diagnosis of T-cell Responses to SARS-CoV-2 Infection Powered by Machine Learning

Robert G. Lisziewicz, Felipe Oviedo, Andras G. Szasz, Juan M. Lavista Ferres, Franco Lori, Julianna Lisziewicz

European Society of Medicine | November 2023

Publication PDF DOI

Using Artificial Intelligence to Advance Public Health

Bill Weeks, Brian Taliesin, Juan M. Lavista Ferres

International Journal of Public Health (IJPH) | November 2023

Publication DOI

Rural-urban disparities in health outcomes, clinical care, health behaviors, and social determinants of health and an action-oriented, dynamic tool for visualizing them

Bill Weeks, Ji E. Chang, José A. Pagán, Jeffrey Lumpkin, Divya Michael, Santiago Salcido, Allen Kim, Peter Speyer, Ann Aerts, James N. Weinstein, Juan M. Lavista Ferres

PLOS Global Public Health | October 2023

Publication DOI Project

An observational, sequential analysis of the relationship between local economic distress and inequities in health outcomes, clinical care, health behaviors, and social determinants of health

Bill Weeks, Juan M. Lavista Ferres, Ji E Chang, José A Pagán, Ann Aerts,, James N Weinstein

International Journal for Equity in Health | September 2023

Publication PDF Project

Risk factors for late (28+ weeks’ gestation) stillbirth in the United States, 2014–2015

Darren Tanner, Sushama Murthy, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A. Mitchell

PLOS ONE | August 2023

Publication DOI

PSMA-Hornet: Fully-automated, multi-target segmentation of healthy organs in PSMA PET/CT images

Ivan S. Klyuzhin, Guillaume Chaussé, Ingrid Bloise, Sara Harsini, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

American Association of Physicists in Medicine | August 2023

Publication DOI

Using data science and a health equity lens to identify long-COVID sequelae among medically underserved populations

Md Nasir, Nicole Cook, Daniel Parras, Sumit Mukherjee, Geralyn Miller, Juan M. Lavista Ferres, Katherine Chung-Bridges

Journal of Health Care for the Poor and Underserved | May 2023

Publication Project

Watching Innovation in Real Time: The Story of ChatGPT and Radiology

Elliot K. Fishman, Bill Weeks, Juan M. Lavista Ferres, Linda C. Chu

Canadian Association of Radiologists Journal | May 2023

Publication

Maternal infections in pregnancy and the risk of sudden unexpected infant death in the offspring in the US, 2011–2015

Maggie Weatherly, Anusua Trivedi, Ratna Chembrolu, Sanjana Gupta, Jan-Marino Ramirez, Juan M. Lavista Ferres, Tatiana M. Anderson, Edwin A. Mitchell

PLoS ONE | April 2023

Publication DOI

Evaluating the Generalizability of Deep Learning Image Classification Algorithms to Detect Middle Ear Disease Using Otoscopy

Al-Rahim Habib, Yixi Xu, Kris Bock, Shrestha Mohanty, Tina Sederholm, Bill Weeks, Rahul Dodhia, Juan M. Lavista Ferres, Chris Perry, Raymond Sacks, Narinder Singh

Scientific Reports | April 2023

Publication

Automatic segmentation of prostate cancer metastases in PSMA PET/CT images using deep neural networks with weighted batch-wise dice loss

Yixi Xu, Ivan Klyuzhin, Sara Harsini, Anthony Ortiz, Shun Zhang, François Bénard, Rahul Dodhia, Carlos F. Uribe, Arman Rahmim , Juan M. Lavista Ferres

Computers in Biology and Medicine | April 2023

Publication DOI Project

A slice classification neural network for automated classification of axial PET/CT slices from a multi-centric lymphoma dataset

Shadab Ahamed, Yixi Xu, Ingrid Bloise, Joo H. O., Carlos F. Uribe, Rahul Dodhia, Juan M. Lavista Ferres, Arman Rahmim

Medical Imaging 2023 | April 2023

Publication

AI as a Public Service

Juan M. Lavista Ferres, Elliot K. Fishman , Steven P. Rowe , Linda C. Chu , Elias Lugo-Fagundo

Journal of the American College of Radiology | March 2023

Publication

Beyond chatting: The opportunities and challenges of ChatGPT in medicine and radiology (Editorial)

Juan M. Lavista Ferres, Bill Weeks, Linda C. Chu , Steven P. Rowe, Elliot K. Fishman

Diagnostic and Interventional Imaging | March 2023

Publication DOI

Predicting the Locations of Cryptic Pockets from Single Protein Structures Using the PocketMiner Graph Neural Network

Artur Meller, Michael Ward, Jonathan Borowsky, Jeffrey M. Lotthammer, Meghana Kshirsagar, Felipe Oviedo, Juan M. Lavista Ferres, Gregory R. Bowman

Nature Communications | February 2023

Publication DOI

Identifying long-term effects of SARS-CoV-2 and their association with social determinants of health in a cohort of over one million COVID-19 survivors

Sumit Mukherjee, Meghana Kshirsagar, Nicholas Becker, Yixi Xu, Bill Weeks, Shwetak Patel, Juan M. Lavista Ferres, Michael L. Jackson

BMC Public Health | December 2022

Publication PDF Project

Novel data analytics identify predictors of quality-of-life trajectories in patients with AML or high-risk Myeloid Neoplasms

Jordan Gauthier, Bianca Furtuna, ,Jacopo Mangiavacchi, Shahrzad Gholami, Juan M. Lavista Ferres, Rahul Dodhia, Amir T. Fathi,, Andrew M. Brunner, Aaron T. Gerds, Mikkael A. Sekeres, Bruno C. Medeiros, Eunice S. Wang, Paul J Shami, Kehinde Adekola, Selina M. Luger, Maria R. Baer, David A Rizzieri, Tanya Wildes, Jamie L. Koprivnikar, Julie Smith, Mitchell A. Garrison, Kiarash Kojouri, Frederick R. Appelbaum, Mary-Elizabeth M. Percival, Stephanie J. Lee, Mohamed L. Sorror

Blood | November 2022

Publication

Factors Associated with the Intention to Receive the COVID-19 Vaccine: Cross-sectional National Study

Monica L Kasting , Jonathan T Macy , Shaun J Grannis , Ashley J Wiensch , Juan M. Lavista Ferres, Brian E Dixon

JMIR Public Health Surveillance | November 2022

Publication PDF Project

The Risk of Hospitalization and Mortality After Breakthrough SARS-CoV-2 Infection by Vaccine Type: Observational Study of Medical Claims Data

Meghana Kshirsagar, Md Nasir, Sumit Mukherjee, Nicholas Becker, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, Barbra Richardson

JMIR Public Health Surveillance | November 2022

Publication PDF Project

MACE: A Flexible Framework for Membership Privacy Estimation in Generative Models

Yixi Xu, Sumit Mukherjee, Xiyang Liu, Shruti Tople, Rahul Dodhia, Juan M. Lavista Ferres

Transactions on Machine Learning Research (TMLR) | October 2022

Publication Project

Machine Learning-based Derivation and External Validation of a Tool to Predict Death and Development of Organ Failure in Hospitalized Patients with COVID-19

Yixi Xu, Anusua Trivedi, Nicholas Becker, Marian Blazes, Juan M. Lavista Ferres, Dr. Aaron Lee, W Liles, Dr. Pavan Bhatraju

Scientific Reports | October 2022

Publication PDF Project

BindVAE: Dirichlet Variational Autoencoders for De Novo Motif Discovery from Accessible Chromatin

Meghana Kshirsagar, Han Yuan, Juan M. Lavista Ferres, Christina Leslie

Genome Biology | August 2022

Publication PDF Github

Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features

Ivan S. Klyuzhin, Juan M. Lavista Ferres, Yixi Xu, Anthony Ortiz, Ghassan Hamarneh, Arman Rahmim

ScienceDirect | June 2022

Publication

T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity

Rebecca Elyanow, Thomas M. Snyder, Sudeb C. Dalai, Rachel M. Gittelman, Boonyaratanakornkit J, Wald A, Selke S, Wener Mh, Morishima C, Greninger Al, Michael Gale, Tien-Ying Hsiang, Lichen Jing, Holbrook Mr, Ian M. Kaplan, Damon H May, H. Jabran Zahid, Jonathan M. Carlson, Lance Baldo, Thomas Manley, Harlan S Robins, David M Koelle

JCI Insight | April 2022, Vol 7(10)

DOI Preprint Publication Project Project

Evaluation of Individual and Ensemble Probabilistic Forecasts of COVID-19 Mortality in the United States

EY Cramer, EL Ray, VK Lopez, J Bracher, A Brennen, [….], Juan M. Lavista Ferres

PNAS | April 2022

Publication PDF Project

Effective Deep Learning Approaches for Predicting COVID-19 Outcomes from Chest Computed Tomography Volumes

Anusua Trivedi, Anthony Ortiz, Caleb Robinson, Jocelyn Desbiens, Marian Blazes, Sunil Gupta, Rahul Dodhia, Pavan Bhatraju, W Conrad Liles, Aaron Lee, Juan M. Lavista Ferres

Nature Scientific Reports | February 2022

Publication PDF Project

Association of Public Health Measures During the COVID-19 Pandemic with the Incidence of Infectious Conjunctivitis

Juan M. Lavista Ferres, Thomas Meirick, Whitney Lomazow, Cecilia S. Lee, Aaron Y. Lee, Michele D. Lee

JAMA Ophthalmology | January 2022

Publication Project

Reimagining Leprosy Elimination with AI Analysis of a Combination of Skin Lesion Images with Demographic and Clinical Data

Raquel R Barbieri, Yixi Xu, Lucy Setian, Paulo Thiago Souza-Santos, Anusua Trivedi, Jim Cristofono, Ricardo Bhering, Kevin White, Anna M Sales, Geralyn Miller, José Augusto C Nery, Michael Sharman, Richard Bumann, Shun Zhang, Mohamad Goldust, Euzenir N Sarno, Fareed Mirza, Arielle Cavaliero, Sander Timmer, Elena Bonfiglioli, Cairns Smith, David Scollard, Alexander A Navarini, Ann Aerts, Juan M. Lavista Ferres, Milton O Moraes

Science Direct | January 2022

Publication PDF Project

Height Estimation of Children under Five Years using Depth Images

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan M. Lavista Ferres

IEEE Eng Med Biol Soc | November 2021

Publication Project

Precision Mapping Child Undernutrition for Nearly 600,000 Inhabited Census Villages in India

Rockli Kim, Avleen S. Bijral, Yun Xu, Xiuyuan Zhang, Jeffrey C. Blossom, Akshay Swaminathan, Gary King, Alok Kumar, Rakesh Sarwal,, Juan M. Lavista Ferres, S. V. Subramanian

PNAS | May 2021, Vol 118

Publication PDF Project

Unsupervised Background Removal by Dual-Modality PET/CT Guidance: Application to PSMA Imaging of Metastases

Ivan Klyuzhin, Yixi Xu, Sara Harsini, Anthony Ortiz, Carlos Uribe, Juan M. Lavista Ferres, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Automated Deep Segmentation of Healthy Organs in PSMA PET/CT Images

Ivan Klyuzhin, Guillaume Chausse, Ingrid Bloise, Juan M. Lavista Ferres, Carlos Uribe, Arman Rahmim

Journal of Nuclear Medicine | May 2021

Publication

Sudden Unexpected Postnatal Collapse Resulting in Newborn Death in the United States

Tatiana M Anderson, Juan M. Lavista Ferres, Jan-Marino Ramirez, Edwin A Mitchell

MCN American Journal of Maternal Child Nursing (In Advance) | February 2021

Publication PDF

Using Internet Search Trends to Forecast Short-term Drug Overdose Deaths: A Case Study on Connecticut

Sumit Mukherjee, Nicholas Becker, Bill Weeks, Juan M. Lavista Ferres

IEEE International Conference on Machine Learning and Applications (ICMLA) | December 2020

Publication

Geographic Variation in Sudden Unexpected Infant Death in the United States

Edwin A.Mitchell, Xiaohan Yan, Shirley You Ren, Tatiana M. Anderson, Jan-Marino Ramirez, Juan M. Lavista Ferres, Richard Johnston

The Journal of Pediatrics | February 2020, Vol 220: pp. 49-55

Publication DOI

Distinct populations of sudden unexpected infant death based on age

Juan M. Lavista Ferres, Tatiana M. Anderson, Richard Johnston, Jan-Marino Ramirez , Edwin A. Mitchell

Pediatrics | January 2020, Vol 145(1)

PDF DOI Video

Maternal smoking before and during pregnancy and the risk of sudden unexpected infant death

Tatiana M. Anderson, Juan M. Lavista Ferres, Shirley You Ren, Rachel Y. Moon, Richard D. Goldstein, Jan-Marino Ramirez, Edwin A. Mitchell

Pediatrics | April 2019, Vol 143(4)

Publication PDF

Parameter-Efficient Fine-Tuning of Protein Language Models Improves Prediction of Protein-Protein Interactions

Samuel Sledzieski, Meghana Kshirsagar, Bonnie Berger, Rahul Dodhia, Juan M. Lavista Ferres

Machine Learning for Structural Biology Workshop, NeurIPS | December 2023

Publication

Towards an automated Segment Anything Model (SAM) for lesion segmentation in oncological PET/CT images

S. Ahamed, Yixi Xu, Rahul Dodhia, Bill Weeks, Juan M. Lavista Ferres, A. Rahmim

2023 IEEE Nuclear Science Symposium | December 2023

Publication DOI

Interpretable Ensemble-based Deep Learning Approach for Automated Detection of Macular Telangiectasia Type 2 by Optical Coherence Tomography

Shahrzad Gholami, Lea Scheppke, Rahul Dodhia, Juan M. Lavista Ferres, Dr. Aaron Lee

ICML Workshop on Interpretable Machine Learning in Healthcare (IMLH 2023), Short Paper | July 2023

Publication PDF

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Height Estimation of Children under Five Years using Depth Images.

Anusua Trivedi, Mohit Jain, Nikhil Kumar Gupta, Markus Hinsche, Prashant Singh, Markus Matiaschek, Tristan Behrens, Mirco Militeri, Cameron Birge, Shivangi Kaushik, Archisman Mohapatra, Rita Chatterjee, Rahul Dodhia, Juan Lavista Ferres, Juan M. Lavista Ferres

IEEE International Engineering in Medicine and Biology Conference (EMBC) | May 2021

Publication Publication Publication Project

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 —human interactome

Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman , Judith Klein-Seetharaman

Pacific Symposium on Biocomputing | January 2021

Publication Project

Binary Mode Multinomial Deep Learning Model for more efficient Automated Diabetic Retinopathy Detection

Anusua Trivedi, J. Desbiens, Ron Gross, S. Gupta, Juan M. Lavista Ferres, Rahul Dodhia

NeurIPS 2019 | December 2019

PDF

Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing

Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez

November 2023

Preprint

Retinal Microvasculature as Biomarker for Diabetes and Cardiovascular Diseases

Anusua Trivedi, Jocelyn Desbiens, Ron Gross, Sunil Gupta, Rahul Dodhia, Juan M. Lavista Ferres

July 2021

Accepted in KDD

Publication

P0: Progress to zero: A simple metric to measure COVID-19 progress by country/region

Juan M. Lavista Ferres, Ruth B Etzioni, Bill Weeks

May 2020

DOI Preprint Project