{"id":278640,"date":"2016-09-06T16:45:58","date_gmt":"2016-09-06T23:45:58","guid":{"rendered":"https:\/\/www.microsoft.com\/en-us\/research\/?post_type=msr-event&p=278640"},"modified":"2017-05-08T07:21:00","modified_gmt":"2017-05-08T14:21:00","slug":"computational-aspects-biological-information-2013","status":"publish","type":"msr-event","link":"https:\/\/www.microsoft.com\/en-us\/research\/event\/computational-aspects-biological-information-2013\/","title":{"rendered":"Computational Aspects of Biological Information 2013"},"content":{"rendered":"

Venue:<\/strong> Microsoft Research New England<\/a>
\nHorace Mann Conference Room
\nFirst Floor Conference Center
\nOne Memorial Drive, Cambridge, MA<\/p>\n","protected":false},"excerpt":{"rendered":"

Venue: Microsoft Research New England Horace Mann Conference Room First Floor Conference Center One Memorial Drive, Cambridge, MA<\/p>\n","protected":false},"featured_media":381725,"template":"","meta":{"msr-url-field":"","msr-podcast-episode":"","msrModifiedDate":"","msrModifiedDateEnabled":false,"ep_exclude_from_search":false,"_classifai_error":"","msr_startdate":"2013-12-16","msr_enddate":"2013-12-16","msr_location":"Cambridge, MA","msr_expirationdate":"","msr_event_recording_link":"","msr_event_link":"","msr_event_link_redirect":false,"msr_event_time":"9:00am","msr_hide_region":false,"msr_private_event":true,"footnotes":""},"research-area":[],"msr-region":[],"msr-event-type":[],"msr-video-type":[],"msr-locale":[268875],"msr-program-audience":[],"msr-post-option":[],"msr-impact-theme":[],"class_list":["post-278640","msr-event","type-msr-event","status-publish","has-post-thumbnail","hentry","msr-locale-en_us"],"msr_about":"Venue:<\/strong> Microsoft Research New England<\/a>\r\nHorace Mann Conference Room\r\nFirst Floor Conference Center\r\nOne Memorial Drive, Cambridge, MA","tab-content":[{"id":0,"name":"About","content":"\"cabi2013_264x200\"Computational Aspects of Biological Information (CABI) 2013 is a one day workshop on challenges in computational biology. CABI 2013 will be held at Microsoft Research New England on December 16, 2013 and will bring together experts in the Boston\/Cambridge area to discuss computational solutions to problems in systems biology, genomics, and related areas.\r\n

<\/h3>\r\n

<\/h3>\r\n

Organizing committee<\/h3>\r\nChristian Borgs (Microsoft Research New England)\r\nJennifer Chayes (Microsoft Research New England)\r\nErnest Fraenkel (Massachusetts Institute of Technology)\r\nAnthony Gitter (Microsoft Research New England)\r\nFranziska Michor (Dana-Farber Cancer Institute, Harvard School of Public Health)"},{"id":1,"name":"Workshop Program","content":"

Workshop program<\/h2>\r\nWhere applicable, links to video replays\u00a0of select workshops are provided.<\/strong>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n
9:00 - 9:50<\/td>\r\nRegistration and breakfast<\/td>\r\n<\/tr>\r\n
9:50 - 10:00<\/td>\r\nOpening remarks<\/td>\r\n<\/tr>\r\n
10:00 - 10:30<\/td>\r\nComputational Genomic Medicine<\/strong>\r\n\r\nJill P. Mesirov (Broad Institute)<\/td>\r\n<\/tr>\r\n
10:30 - 11:00<\/td>\r\nSynthetic Biology and Biocomputation: Life Redesigned<\/strong>\r\n\r\nJim Collins (Boston University, Howard Hughes Medical Institute, Wyss Institute, Harvard University)<\/td>\r\n<\/tr>\r\n
11:00 - 11:15<\/td>\r\nCoffee break<\/td>\r\n<\/tr>\r\n
11:15 - 11:45<\/td>\r\nEvolutionary Forces in Humans and Pathogens<\/strong>\r\n\r\nPardis Sabeti (Harvard University, Broad Institute)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
11:45 - 12:15<\/td>\r\nTranscription Factors and DNA Regulatory Elements<\/b>\r\n\r\nMartha Bulyk (Brigham & Women's Hospital, Harvard Medical School)<\/td>\r\n<\/tr>\r\n
12:15 - 1:00<\/td>\r\nLunch<\/td>\r\n<\/tr>\r\n
1:00 - 1:30<\/td>\r\nPoster session<\/td>\r\n<\/tr>\r\n
1:30 - 2:00<\/td>\r\nInstrumenting the Healthcare Enterprise<\/b>\r\n\r\nIsaac (Zak) Kohane (Harvard Medical School)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
2:00 - 2:30<\/td>\r\nAnalysis of Cell-Cell Communication Networks in Inflammatory Pathologies<\/strong>\r\n\r\nDoug Lauffenburger (Massachusetts Institute of Technology)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
2:30 - 3:00<\/td>\r\nComputational Discovery of Directional Pioneer Factors<\/strong>\r\n\r\nDavid Gifford (Massachusetts Institute of Technology)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
3:00 - 3:45<\/td>\r\nCoffee break\u00a0\/ Posters<\/td>\r\n<\/tr>\r\n
3:45 - 4:15<\/td>\r\nMessage Passing: Modeling the Flow of Information in Cellular Networks<\/strong>\r\n\r\nJohn Quackenbush (Dana-Farber Cancer Institute, Harvard School of Public Health)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
4:15 - 4:45<\/td>\r\nComputational Analysis of Mutational Heterogeneity in Cancer<\/strong>\r\n\r\nBen Raphael (Brown University)<\/td>\r\n<\/tr>\r\n
4:45 - 5:15<\/td>\r\nInterpreting Cancer Copy-Number Alterations<\/strong>\r\n\r\nRameen Beroukhim (Harvard Medical School, Broad Institute, Dana-Farber Cancer Institute)\r\nWatch the video replay >><\/a><\/td>\r\n<\/tr>\r\n
5:15 - 5:20<\/td>\r\nClosing remarks<\/td>\r\n<\/tr>\r\n<\/tbody>\r\n<\/table>"},{"id":2,"name":"Poster Session","content":"The following posters will be presented at CABI 2013:\r\n
    \r\n \t
  • A tunable coarse-grained model for ligand-receptor interaction. Teresa Ruiz-Herrero, Javier Estrada, Ra\u00fal Guantes, David G. M\u00edguez.<\/li>\r\n \t
  • Going the distance for protein function prediction. Mengfei Cao, Hao Zhang, Jisoo Park, Noah Daniels, Mark Crovella, Lenore Cowen, Benjamin Hescott.<\/li>\r\n \t
  • Got a way to extract those one thousand words from your images? Tiao Xie, Hunter Elliott, Joy Yichao Xu.<\/li>\r\n \t
  • Position-specific effects of codon choice in an essential gene. Eric Kelsic, Hattie Chung, Harris Wang, Roy Kishony.<\/li>\r\n \t
  • PathSeq: Computational tool to identify or discover microbes by deep sequencing of human tissue. Chandra Sekhar Pedamallu, Akinyemi I Ojesina, Joonil Jung, Aleksandar D Kostic, Ami Bhatt, Samuel Freeman, Fujiko Duke, Peter Carr, Gad Getz, Matthew Meyerson.<\/li>\r\n \t
  • Genecentric: A package to uncover graph-theoretic structure in high-throughput epistasis data. Andrew Gallant, Mark D.M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott.<\/li>\r\n \t
  • Different RTK ligands induce heterogeneous FOXO3a translocation dynamics. Somponnat Sampattavanich*, Bernhard Kramer*, John G. Albeck, Peter K. Sorger.<\/li>\r\n \t
  • Analysis of Chromatin State Plasticity Identifies Cell-type Specific Regulators of H3K27me3 Patterns. Luca Pinello, Jian Xu, Stuart H. Orkin*, Guo-Cheng Yuan*.<\/li>\r\n \t
  • Analysis of Complex Variants From High\u2010Throughput DNA Sequencing Data. Layla Oesper, Gryte Satas, Max Song, Simone Dantas, Benjamin J. Raphael.<\/li>\r\n \t
  • Inferring Dynamic Signatures of Microbes in Complex Host Ecosystems. Georg K. Gerber, Andrew Onderdonk, Lynn Bry.<\/li>\r\n \t
  • RNA folding pathways and kinetics using 2D energy grids. Evan Senter, Ivan Dotu, Peter Clote.<\/li>\r\n \t
  • GenomeSpace: An Environment for Frictionless Bioinformatics. Barbara Hill Meyers, Michael Reich, Ted Liefeld, Marco Ocana, Dongkeun Jang, Jon Bistline, James Robinson, Peter Carr, Nathalie Pochet, Diego Borges-Rivera, Thorin Tabor, Helga Thorvaldsd\u00f3ttir, Aviv Regev, Jill P Mesirov.<\/li>\r\n \t
  • A Randomized Approach to Fast Read Processing. Roy Lederman.<\/li>\r\n \t
  • Knowledge based bioinformatics methods for understanding the genetic architecture of Complex Diseases. Alper Uzun, Andrew Dewan, Bethany Mcgonnigal, James Padbury.<\/li>\r\n \t
  • Predicting xenobiotic transformations through human cytochrome P450. Mona Yousofshahi, Sara Manteiga, Charmian Wu, Kyongbum Lee, Soha Hassoun.<\/li>\r\n \t
  • TILSH: A Method to Detect Interchromosomal Translocations and Interchromosomal Insertions using Sliding Window Fingerprints and Locality Sensitive Hashing. Roshanak Farhoodi, Nurit Haspel, Rohith Kotla, Jennifer Rosen, Dan Simovici, Rosanne Vetro, David Weisman.<\/li>\r\n \t
  • Dendrix++: A Probabilistic Method for Identifying Mutated Driver Pathways in Cancer. Mark DM Leiserson, Hsin-Ta Wu, Vivian Hsiao, Fabio Vandin, Benjamin J. Raphael.<\/li>\r\n \t
  • Improving the accuracy and performance of robust pipelines for genetic variation calling from NGS data. GSA-GATK Team @ Broad Institute.<\/li>\r\n \t
  • Using a Population Genome Graph Reference for Sequence Alignment & Genotyping Structural Variants. Deniz Kural, Gabor Marth.<\/li>\r\n \t
  • RNAiFold: A constraint programming algorithm for RNA inverse folding and molecular design. Juan Antonio Garcia Martin, Ivan Dotu, Peter Clote.<\/li>\r\n \t
  • Massively Parallel Model of Cardiovascular Hemodynamics. Amanda Randles, Erik Draeger, Efthimios Kaxiras, Franziska Michor.<\/li>\r\n \t
  • Patient stratification in secondary progressive multiple sclerosis (SPMS) using a mixture of experts model. Raghavendra Hosur, Suzanne Szak, Jadwiga Bienkowska.<\/li>\r\n<\/ul>\r\n* Equal contribution"}],"msr_startdate":"2013-12-16","msr_enddate":"2013-12-16","msr_event_time":"9:00am","msr_location":"Cambridge, MA","msr_event_link":"","msr_event_recording_link":"","msr_startdate_formatted":"December 16, 2013","msr_register_text":"Watch now","msr_cta_link":"","msr_cta_text":"","msr_cta_bi_name":"","featured_image_thumbnail":"\"\"","event_excerpt":"Computational Aspects of Biological Information (CABI) 2013 is a one day workshop on challenges in computational biology. CABI 2013 will be held at Microsoft Research New England on December 16, 2013 and will bring together experts in the Boston\/Cambridge area to discuss computational solutions to problems in systems biology, genomics, and related areas. Organizing committee Christian Borgs (Microsoft Research New England) Jennifer Chayes (Microsoft Research New England) Ernest Fraenkel (Massachusetts Institute of Technology) Anthony Gitter…","msr_research_lab":[199563],"related-researchers":[],"msr_impact_theme":[],"related-academic-programs":[],"related-groups":[],"related-projects":[],"related-opportunities":[],"related-publications":[],"related-videos":[],"related-posts":[],"_links":{"self":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-event\/278640"}],"collection":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-event"}],"about":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/types\/msr-event"}],"version-history":[{"count":0,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-event\/278640\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/media\/381725"}],"wp:attachment":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/media?parent=278640"}],"wp:term":[{"taxonomy":"msr-research-area","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/research-area?post=278640"},{"taxonomy":"msr-region","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-region?post=278640"},{"taxonomy":"msr-event-type","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-event-type?post=278640"},{"taxonomy":"msr-video-type","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-video-type?post=278640"},{"taxonomy":"msr-locale","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-locale?post=278640"},{"taxonomy":"msr-program-audience","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-program-audience?post=278640"},{"taxonomy":"msr-post-option","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-post-option?post=278640"},{"taxonomy":"msr-impact-theme","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-impact-theme?post=278640"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}