{"id":342557,"date":"2016-12-28T12:46:47","date_gmt":"2016-12-28T20:46:47","guid":{"rendered":"https:\/\/www.microsoft.com\/en-us\/research\/?post_type=msr-research-item&p=342557"},"modified":"2018-10-16T22:22:07","modified_gmt":"2018-10-17T05:22:07","slug":"hiv-1-adaptation-hla-window-virus-host-immune-interactions","status":"publish","type":"msr-research-item","link":"https:\/\/www.microsoft.com\/en-us\/research\/publication\/hiv-1-adaptation-hla-window-virus-host-immune-interactions\/","title":{"rendered":"HIV-1 Adaptation to HLA: A Window into Virus\u2013Host Immune Interactions"},"content":{"rendered":"

HIV-1 adaptation to HLA: a window into virus\u2013host immune interactions<\/h1>\n

\"\"This review with Zabrina Brumme gives an overview of HLA-mediated escape. We go over the history of HLA-mediated escape, showing how studying HIV adaptation has lead to fundamental insights into virology, immunology, and vaccine design. In effect, the rapid rate of HIV mutation, coupled with the astonishing plasticity of the virus, means that the virus is constantly exploring ways to adapt to its environment. Studying these adaptations provides an excellent starting point for understanding how the immune system works and what factors constrain viral evolution. A free version<\/a> will be available from the publisher until May 15. After that, you can read the authors’ version<\/a> (pdf) free.<\/p>\n

Abstract<\/h2>\n

HIV-1 develops specific mutations within its genome that allow it to escape detection by human leukocyte antigen (HLA) class I-restricted immune responses, notably those of CD8+<\/sup> cytotoxic T lymphocytes (CTL). HLA thus represents a major force driving the evolution and diversification of HIV-1 within individuals and at the population level. Importantly, the study of HIV-1 adaptation to HLA also represents an opportunity to identify what qualities constitute an effective immune response, how the virus in turn adapts to these pressures, and how we may harness this information to design HIV-1 vaccines that stimulate effective cellular immunity.<\/p>\n","protected":false},"excerpt":{"rendered":"

HIV-1 adaptation to HLA: a window into virus\u2013host immune interactions This review with Zabrina Brumme gives an overview of HLA-mediated escape. We go over the history of HLA-mediated escape, showing how studying HIV adaptation has lead to fundamental insights into virology, immunology, and vaccine design. In effect, the rapid rate of HIV mutation, coupled with […]<\/p>\n","protected":false},"featured_media":446343,"template":"","meta":{"msr-url-field":"","msr-podcast-episode":"","msrModifiedDate":"","msrModifiedDateEnabled":false,"ep_exclude_from_search":false,"_classifai_error":"","footnotes":""},"msr-content-type":[3],"msr-research-highlight":[],"research-area":[13554],"msr-publication-type":[193715],"msr-product-type":[],"msr-focus-area":[],"msr-platform":[],"msr-download-source":[],"msr-locale":[268875],"msr-post-option":[],"msr-field-of-study":[],"msr-conference":[],"msr-journal":[],"msr-impact-theme":[],"msr-pillar":[],"class_list":["post-342557","msr-research-item","type-msr-research-item","status-publish","has-post-thumbnail","hentry","msr-research-area-human-computer-interaction","msr-locale-en_us"],"msr_publishername":"","msr_edition":"Trends in Microbiology","msr_affiliation":"","msr_published_date":"2015-04-02","msr_host":"","msr_duration":"","msr_version":"","msr_speaker":"","msr_other_contributors":"","msr_booktitle":"","msr_pages_string":"212-224","msr_chapter":"","msr_isbn":"","msr_journal":"Trends in Microbiology","msr_volume":"23","msr_number":"","msr_editors":"","msr_series":"","msr_issue":"4","msr_organization":"","msr_how_published":"","msr_notes":"","msr_highlight_text":"","msr_release_tracker_id":"","msr_original_fields_of_study":"","msr_download_urls":"","msr_external_url":"","msr_secondary_video_url":"","msr_longbiography":"","msr_microsoftintellectualproperty":1,"msr_main_download":"362882","msr_publicationurl":"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0966842X14002650","msr_doi":"10.1016\/j.tim.2014.12.008","msr_publication_uploader":[{"type":"file","title":"HIV-1 Adaptation to HLA: A Window into Virus\u2013Host Immune Interactions (Author Version)","viewUrl":"https:\/\/www.microsoft.com\/en-us\/research\/wp-content\/uploads\/2016\/12\/CarlsonTrends2015-author-version.pdf","id":362882,"label_id":0},{"type":"url","title":"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0966842X14002650","viewUrl":false,"id":false,"label_id":0},{"type":"doi","title":"10.1016\/j.tim.2014.12.008","viewUrl":false,"id":false,"label_id":0}],"msr_related_uploader":"","msr_attachments":[{"id":0,"url":"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0966842X14002650"}],"msr-author-ordering":[{"type":"user_nicename","value":"carlson","user_id":31333,"rest_url":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=carlson"},{"type":"text","value":"Anh Q. Le","user_id":0,"rest_url":false},{"type":"text","value":"Aniqa Shahid","user_id":0,"rest_url":false},{"type":"text","value":"Zabrina L. Brumme","user_id":0,"rest_url":false}],"msr_impact_theme":[],"msr_research_lab":[],"msr_event":[],"msr_group":[144943],"msr_project":[396113],"publication":[],"video":[],"download":[],"msr_publication_type":"article","related_content":{"projects":[{"ID":396113,"post_title":"PhyloD","post_name":"phylod","post_type":"msr-project","post_date":"2017-07-03 15:17:56","post_modified":"2021-02-11 17:39:50","post_status":"publish","permalink":"https:\/\/www.microsoft.com\/en-us\/research\/project\/phylod\/","post_excerpt":"HIV, like most retroviruses, is characterized by a tremendous rate of mutation, which leads to a high level of genetic diversity within and among patients. This genetic variation is the substrate for rapid within-host evolution. As our immune system learns to target the virus, the virus adapts, leading to an endless game of cat-and-mouse. From a scientific perspective, this provides a useful opportunity: if HIV is constantly adapting to our individual immune responses, then studying…","_links":{"self":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-project\/396113"}]}}]},"_links":{"self":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-research-item\/342557"}],"collection":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-research-item"}],"about":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/types\/msr-research-item"}],"version-history":[{"count":3,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-research-item\/342557\/revisions"}],"predecessor-version":[{"id":543121,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-research-item\/342557\/revisions\/543121"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/media\/446343"}],"wp:attachment":[{"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/media?parent=342557"}],"wp:term":[{"taxonomy":"msr-content-type","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-content-type?post=342557"},{"taxonomy":"msr-research-highlight","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-research-highlight?post=342557"},{"taxonomy":"msr-research-area","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/research-area?post=342557"},{"taxonomy":"msr-publication-type","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-publication-type?post=342557"},{"taxonomy":"msr-product-type","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-product-type?post=342557"},{"taxonomy":"msr-focus-area","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-focus-area?post=342557"},{"taxonomy":"msr-platform","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-platform?post=342557"},{"taxonomy":"msr-download-source","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-download-source?post=342557"},{"taxonomy":"msr-locale","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-locale?post=342557"},{"taxonomy":"msr-post-option","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-post-option?post=342557"},{"taxonomy":"msr-field-of-study","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-field-of-study?post=342557"},{"taxonomy":"msr-conference","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-conference?post=342557"},{"taxonomy":"msr-journal","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-journal?post=342557"},{"taxonomy":"msr-impact-theme","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-impact-theme?post=342557"},{"taxonomy":"msr-pillar","embeddable":true,"href":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/wp\/v2\/msr-pillar?post=342557"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}