{"id":487688,"date":"2018-05-24T05:57:34","date_gmt":"2018-05-24T12:57:34","guid":{"rendered":"https:\/\/www.microsoft.com\/en-us\/research\/?post_type=msr-research-item&p=487688"},"modified":"2018-10-16T22:25:43","modified_gmt":"2018-10-17T05:25:43","slug":"computational-algorithms-biological-switches","status":"publish","type":"msr-research-item","link":"https:\/\/www.microsoft.com\/en-us\/research\/publication\/computational-algorithms-biological-switches\/","title":{"rendered":"Computational algorithms as biological switches"},"content":{"rendered":"
Biological systems have developed a wide range of mechanisms to respond to changes in their environment. Biological switches are mechanisms which drive a change in the functional state of a system in an all-or-none fashion. Biological switches produce a reliable and robust transition between states, sometimes generating an irreversible transition.<\/p>\n
Current eukaryotic switches usually contain several components with multiple positive feedback loops. This level of complexity could have been reached by an evolutionary process from a simple system. The simplest possible system could have been a single molecule that regulates itself and it can go through different functional states. Most of the quickly responding switches work on the post- translational level. Phosphorylation has been proposed as an ancient post-translational mechanism, which could have defined phosphorylated and dephosphorylated states.<\/p>\n
It was previously shown that simple systems based on single autocatalytic element could behave like a switch. Therefore, maybe there exist an evolutionary way of obtaining complex networks from simpler ones. We investigate from a computational perspective, the increasing complexity from simple systems to complex ones and how their key properties could have been kept through evolution.<\/p>\n","protected":false},"excerpt":{"rendered":"
Biological systems have developed a wide range of mechanisms to respond to changes in their environment. Biological switches are mechanisms which drive a change in the functional state of a system in an all-or-none fashion. Biological switches produce a reliable and robust transition between states, sometimes generating an irreversible transition. Current eukaryotic switches usually contain […]<\/p>\n","protected":false},"featured_media":0,"template":"","meta":{"msr-url-field":"","msr-podcast-episode":"","msrModifiedDate":"","msrModifiedDateEnabled":false,"ep_exclude_from_search":false,"_classifai_error":"","msr-author-ordering":null,"msr_publishername":"","msr_publisher_other":"","msr_booktitle":"","msr_chapter":"","msr_edition":"Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology","msr_editors":"","msr_how_published":"","msr_isbn":"","msr_issue":"","msr_journal":"","msr_number":"","msr_organization":"","msr_pages_string":"","msr_page_range_start":"","msr_page_range_end":"","msr_series":"","msr_volume":"","msr_copyright":"","msr_conference_name":"Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology","msr_doi":"","msr_arxiv_id":"","msr_s2_paper_id":"","msr_mag_id":"","msr_pubmed_id":"","msr_other_authors":"","msr_other_contributors":"","msr_speaker":"","msr_award":"","msr_affiliation":"","msr_institution":"","msr_host":"","msr_version":"","msr_duration":"","msr_original_fields_of_study":"","msr_release_tracker_id":"","msr_s2_match_type":"","msr_citation_count_updated":"","msr_published_date":"2016-03-21","msr_highlight_text":"","msr_notes":"","msr_longbiography":"","msr_publicationurl":"https:\/\/assb.lri.fr\/Proceedings\/LivreEvry-16.pdf#page=119","msr_external_url":"","msr_secondary_video_url":"","msr_conference_url":"","msr_journal_url":"","msr_s2_pdf_url":"","msr_year":0,"msr_citation_count":0,"msr_influential_citations":0,"msr_reference_count":0,"msr_s2_match_confidence":0,"msr_microsoftintellectualproperty":true,"msr_s2_open_access":false,"msr_s2_author_ids":[],"msr_pub_ids":[],"msr_hide_image_in_river":0,"footnotes":""},"msr-research-highlight":[],"research-area":[13546],"msr-publication-type":[193716],"msr-publisher":[],"msr-focus-area":[],"msr-locale":[268875],"msr-post-option":[],"msr-field-of-study":[],"msr-conference":[],"msr-journal":[],"msr-impact-theme":[],"msr-pillar":[],"class_list":["post-487688","msr-research-item","type-msr-research-item","status-publish","hentry","msr-research-area-computational-sciences-mathematics","msr-locale-en_us"],"msr_publishername":"","msr_edition":"Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology","msr_affiliation":"","msr_published_date":"2016-03-21","msr_host":"","msr_duration":"","msr_version":"","msr_speaker":"","msr_other_contributors":"","msr_booktitle":"","msr_pages_string":"","msr_chapter":"","msr_isbn":"","msr_journal":"","msr_volume":"","msr_number":"","msr_editors":"","msr_series":"","msr_issue":"","msr_organization":"","msr_how_published":"","msr_notes":"","msr_highlight_text":"","msr_release_tracker_id":"","msr_original_fields_of_study":"","msr_download_urls":"","msr_external_url":"","msr_secondary_video_url":"","msr_longbiography":"","msr_microsoftintellectualproperty":1,"msr_main_download":"","msr_publicationurl":"https:\/\/assb.lri.fr\/Proceedings\/LivreEvry-16.pdf#page=119","msr_doi":"","msr_publication_uploader":[{"type":"url","title":"https:\/\/assb.lri.fr\/Proceedings\/LivreEvry-16.pdf#page=119","viewUrl":false,"id":false,"label_id":0}],"msr_related_uploader":"","msr_citation_count":0,"msr_citation_count_updated":"","msr_s2_paper_id":"","msr_influential_citations":0,"msr_reference_count":0,"msr_arxiv_id":"","msr_s2_author_ids":[],"msr_s2_open_access":false,"msr_s2_pdf_url":null,"msr_attachments":[{"id":0,"url":"https:\/\/assb.lri.fr\/Proceedings\/LivreEvry-16.pdf#page=119"}],"msr-author-ordering":[{"type":"text","value":"Rosa Hernansaiz-Ballesteros","user_id":0,"rest_url":false},{"type":"user_nicename","value":"Neil Dalchau","user_id":33070,"rest_url":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Neil Dalchau"},{"type":"user_nicename","value":"Luca Cardelli","user_id":32743,"rest_url":"https:\/\/www.microsoft.com\/en-us\/research\/wp-json\/microsoft-research\/v1\/researchers?person=Luca Cardelli"},{"type":"text","value":"Attila Csikasz-Nagy","user_id":0,"rest_url":false}],"msr_impact_theme":[],"msr_research_lab":[199561],"msr_event":[],"msr_group":[],"msr_project":[544545,170215],"publication":[],"video":[],"msr-tool":[],"msr_publication_type":"inproceedings","related_content":{"projects":[{"ID":544545,"post_title":"Station B","post_name":"stationb","post_type":"msr-project","post_date":"2019-03-11 15:56:07","post_modified":"2021-09-28 09:10:36","post_status":"publish","permalink":"https:\/\/www.microsoft.com\/en-us\/research\/project\/stationb\/","post_excerpt":"Our work on the Station B project has now been retired. We continue to actively explore the exciting intersection of computing and life sciences, with other projects located on\u00a0www.microsoft.com\/research. Building a platform for programming biology The ability to program biology could enable fundamental breakthroughs across a broad range of industries, including medicine, agriculture, food, construction, textiles, materials and chemicals. It could also help lay the foundation for a future bioeconomy based on sustainable technology. 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