Boosting GPT Models for Genomics Analysis: Generating Trusted Genetic Variant Annotations and Interpretations through RAG and fine-tuning
Shuangjia Lu, Erdal Cosgun
November 2024
Erdal Cosgun
Senior Data and Applied Scientist
Publications
Publications by Year
-
Methodological Research on Radiogenomics: Combining Radiomics and Genomics for Classification
Merve KASIKCI, Erdal Cosgun, Erdem Karabulut
Turkiye Klinikleri Journal of Biostatistics | January 2024, Vol 16(1)
-
Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing
Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez
November 2023
Comparison of deep learning-based recurrence-free survival with random survival forest and Cox proportional hazard models in Stage-I NSCLC patients
Irem Kar, Gokhan Kocaman, Farrukh İbrahimov, Serkan Enön, Erdal Cosgun, Atilla Halil Elhan
Cancer Medicine | August 2023
CRM1 expression: association with high prognostic value in laryngeal cancer
Talih Ozdas, Sibel Ozdas, Ipek Canatar, Erdal Cosgun, Burcu Elif Senyurt, Orhan Gorgulu
Turkish Journal of Medical Sciences | August 2023, Vol 53(4)
Hybrid model approach in data mining
Batuhan Bakirarar, Erdal Cosgun, Atilla Halil Elhan
Communications in Statistics - Simulation and Computation | January 2023
A cloud-based pipeline for analysis of FHIR and long-read data
Tim Dunn, Erdal Cosgun
Bioinformatics Advances | January 2023
-
The Effect of Missing Data Mechanisms on Deep Learning in Binary Classification: A Simulation Study
Ebru Ozturk, Yagmur Zengin, Merve KASIKCI, Erdal Cosgun
Turkiye Klinikleri Journal of Biostatistics | December 2022, Vol 15(1)
Classification Performance Comparison of Deep Learning and Classical Data Mining Methods on RNA-Seq Dataset
Merve Kasikci, Erdal Cosgun, Erdem Karabulut
International Journal of Data Mining and Bioinformatics | September 2022
-
An assessment of emergency department visits for cardiovascular diseases in the early phase of the COVID-19 pandemic in Istanbul
Yesim Yasin, Serpil Yaylaci, Berna Eren, Erdal Cosgun
November 2021, Vol 17(6): pp. 103-111
Correlation of anatomical involvement patterns of insular gliomas with subnetworks of the limbic system
Ege Ülgen, Fuat Kaan Aras, Erdal Cosgun, Ayça Erşen-Danyeli, Alp Dinçer, M İmre Usseli, Koray Özduman, M Necmettin Pamir
Journal of Neurosurgery | July 2021, pp. 1-12
-
Effect of Missing Data Imputation on Deep Learning Prediction Performance for Vesicoureteral Reflux and Recurrent Urinary Tract Infection Clinical Study
Timur Kose, Su Ozgur, Erdal Cosgun (ercosgun), Ahmet Keskinoglu, Pembe Keskinoglu
Biomed Research International | July 2020, Vol 2020(15): pp. 1-15
Evaluation of Machine Learning and Deep Learning Method’s Performance on Different Sample Size Scenarios for Genome-wide Association Studies
Ragıp Onur OZTORNACI, Erdal Cosgun (ercosgun), Bahar TASDELEN
Turkiye Klinikleri Journal of Biostatistics | May 2020, Vol 2020: pp. 1-7
Antenatal corticosteroids for women at risk of preterm delivery: the “Emperor’s New Clothes” tale in medical practice
Mehmet Sinan Beksac, Ayse Korkmaz, Taner Kasapoglu, Pinar Ozdemir, Erdal Cosgun, Atakan Tanacan
The Journal of Maternal-Fetal & Neonatal Medicine | February 2020, Vol 2020(X)
Exploring the Consistency of the Quality Scores with Machine Learning for Next-Generation Sequencing Experiments.
Erdal Cosgun, Min Oh
BioMed Research International | February 2020, Vol 2020: pp. 8531502-6
-
Turkish version of the Yale Food Addiction Scale: preliminary results of factorial structure, reliability, and construct validity
Zehra Buyuktuncer, Asli Akyol, Aylin Ayaz, Reyhan Nergiz-Unal, Burcu Aksoy, Erdal Cosgun (ercosgun), et al.
Journal of Health, Population and Nutrition | December 2019, Vol 38(42)
Is the pathological-grade relevant in “IDH-wild type, TERT-mutant” diffuse-gliomas? An analysis in 147 patients
A E Danyeli, C B Akyerli, A Dinçer, Erdal Cosgun, U Abacıoğlu, M Pamir, K Özduman
14th Meeting of the European Association of Neuro-Oncology | September 2019
Predicting Students’ STEM Career Interest with Data Mining Approach
Gökhan Akçapınar, Erdal Cosgun (ercosgun)
Educational Technology Theory and Practice | February 2019, Vol 9(1): pp. 73-88
-
PKNOX2 expression and regulation in the bone marrow mesenchymal stem cells of Fanconi anemia patients and healthy donors
Ilgin Cagnan, Erdal Cosgun, Ozlen Konu, Duygu Uckan, Aysen Gunel Ozcan
Vol.:(0123456789) 1 3 Molecular Biology Reports | December 2018
Exploring the consistency of the quality scores with machine learning for next-generation sequencing experiments (2018)
Min Oh, Erdal Cosgun
American Society of Human Genetics 2018 | October 2018
PgmNr 1480/T
-
Use of telomerase promoter mutations to mark specific molecular subsets with reciprocal clinical behavior in IDH mutant and IDH wild-type diffuse gliomas
Cemaliye B. Akyerli, Şirin Yüksel, Özge Can, E. Zeynep Erson-Omay, Yavuz Oktay, Erdal Cosgun, Ege Ülgen, Yiğit Erdemgil, Aydın Sav, Andreas von Deimling, Murat Günel, M. Cengiz Yakıcıer, M. Necmettin Pamir, Koray Özduman
J Neurosurg | June 2017, pp. 1:13
PKNOX2 regulated by TGFbeta is a new candidate to explain bone marrow failure in fanconi anemia
Ilgin Cagnan, Fatima Aerts Kaya, Erdal Cosgun, Ozlen Konu, Duygu Uckan Cetinkaya, Aysen Gunel Ozcan
Experimental Hematology | June 2017, Vol 53: pp. S136
-
New Generation of Machine Learning: Analysis of Single Nucleotide Polymorphism Data with Deep Learning
18th National Biostatistics Conference | October 2016
Effect of Temperature and Humidity on Serum Prostate Specific Antigen Levels in Asymptomatic Male Population
Murat Tugrul Eren, Hakan Ozveri, Erdal Cosgun
Journal of Urological Surgery | September 2016, Vol 4: pp. 127-132
Methylenetetrahydrofolate Reductase Enzyme Mutations and Relationship of Homocysteine Vitamin B12 and Folate Blood Levels
Tuba Günebak Şahin, Berkan Sayal, Erdal Cosgun, Tanju Besler, Sinan Beksaç
Gynecology Obstetrics & Reproductive Medicine | May 2016, Vol 19
Early Onset of Atherosclerosis of The Carotid Bifurcation in Newborn Cadavers
Bahar Uslu, Yusuf Ozgur Cakmak, Umit Sehirli, Elif Nedret Keskinoz, Erdal Cosgun, Serap Arbak, Aymelek Yalin
J Clin Diagn Res | May 2016, Vol 10
Push-out bond strength and dentinal tubule penetration of different root canal sealers used with coated core materials
Derya Deniz Sungurlu, Nuhan Purali, Erdal Cosgun (ercosgun), S.Calt
Restor Dent Endod | May 2016, Vol 41: pp. 114-120
Evaluation of the origin and branching patterns of the iliolumbar artery and its implications on pelvic and vertebral surgery
Turan Koc, Ismail Y. Gilan, Mustafa Aktekin, Zeliha Kurtoglu, Ahmet Dagtekin, Gunes Aytac, Erdal Cosgun
Saudi Med J. | April 2016, Vol 37: pp. 457-460
-
Comparison of classical and clustering based reference interval calculations for Aspartate Aminotransferase, Alanine Aminotransferase and Gamma-Glutamyl Transferase in serum
Erdal Cosgun, Deniz Ilhan Topcu, Yahya Laleli
Turkish Journal of Biochemistry | October 2015, Vol 40(5)
-
Functional disability in Alzheimer disease: a validation study of the Turkish version of the disability assessment for dementia scale
Mukaddes Tozlu, Cankurtaran,M., Yavuz,BB., Cankurtaran,ES., Kutluer,I., Erkek,BM., Halil,M., Ulger,Z., Erdal Cosgun, Ariogul,S.
J Geriatr Psychiatry Neurol | December 2014, Vol 27: pp. 237-246
The genetic variants of thymic stromal lymphopoietin protein in children with asthma and allergic rhinitis
Birben E, Sahiner UM, Karaaslan C, Yavuz TS, Erdal Cosgun, Kalayci O, Sackesen C
Int Arch Allergy Immunol | February 2014, Vol 163: pp. 185-192
-
New approach to unsupervised based classification on microarray data
December 2013
PhD Thesis: Hacettepe University | December 2013
Introduction to statistical methods for microRNA analysis
Gokmen Zararsiz, Erdal Cosgun
Chapter Introduction to Statistical Methods for MicroRNA Analysis, in miRNomics: MicroRNA Biology and Computational Analysis
November 2013
Effect of resin shades on opacity of ceramic veneers and polymerization efficiency through ceramics
Ozturk E, Chiang YC, Erdal Cosgun, Bolay S, Hickel R, Ilie N
J Dent. | June 2013, Vol 41: pp. 8-14
Effect of biofilm formation, and biocorrosion on denture base fractures
Sahin C, Ergin A, Ayyildiz S, Erdal Cosgun, Uzun G
J Adv Prosthodont. | May 2013, Vol 52(2): pp. 140-146
-
Epidemiologic trends in HBV infections at a reference centre in Turkey: an 11-year retrospective analysis
Ergunay K, Balaban Y, Erdal Cosgun, Alp A, Simsek H, Sener B, Tatar G, Hascelik G
Ann Hepatol | September 2012, Vol 11: pp. 672-678
-
Is gastro-gastric fixation suture necessary in laparoscopic adjustable gastric banding? A prospective randomized study
Avsar FM, Sakcak I, Yildiz BD, Erdal Cosgun, Hamamci EO
J Laparoendosc Adv Surg Tech A | October 2011, Vol 21: pp. 953-956
Does N ratio affect survival in D1 and D2 lymph node dissection for gastric cancer?
Sakcak I, Yildiz BD, Avsar FM, Akturan S, Kilic K, Erdal Cosgun, Hamamci EO
World J Gastroenterol | September 2011, Vol 21: pp. 4007-4012
Management of concurrent cholelithiasis in gastric banding for morbid obesity
Sakcak I, Avsar FM, Erdal Cosgun, Yildiz BD
Eur J Gastroenterol Hepatol | September 2011, Vol 23: pp. 766-769
The New Hybrid Method for Classification of Patients by Gene Expression
Erdal Cosgun, Karaagaoglu E
Biomedical Engineering | 2011
Comparison of the application of low concentration and 80% phenol solution in pilonidal sinus disease
Sakcak I, Avsar FM, Erdal Cosgun
JRSM Short Rep | June 2011, Vol 1: pp. 5
High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans
Erdal Cosgun, Nita Limdi, Christine W.Duarte
Bioonformatics | March 2011, Vol 27(10): pp. 1384-1389
Preoperative Localization in Primary Hyperparathyroidism Surgery
Hamamci EO, Piyade R, Bostanoglu S, Sakcak I, Avsar MF, Erdal Cosgun
Turkiye Klinikleri J Med Sci | March 2011, Vol 31: pp. 686-690
-
Comparison of early and late changes in immunoglobulins and acute phase reactants after laparoscopic adjustable gastric banding in patients with morbid obesity
Sakcak I, Avsar MF, Hamamci EO, Bostanoglu S, Sonisik M, Bostanoglu A, Erdem NZ, Erdal Cosgun
Obes Surg | May 2010, Vol 20: pp. 610-615
Publications by Research Area
-
Boosting GPT Models for Genomics Analysis: Generating Trusted Genetic Variant Annotations and Interpretations through RAG and fine-tuning
Shuangjia Lu, Erdal Cosgun
November 2024
Methodological Research on Radiogenomics: Combining Radiomics and Genomics for Classification
Merve KASIKCI, Erdal Cosgun, Erdem Karabulut
Turkiye Klinikleri Journal of Biostatistics | January 2024, Vol 16(1)
Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing
Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez
November 2023
Comparison of deep learning-based recurrence-free survival with random survival forest and Cox proportional hazard models in Stage-I NSCLC patients
Irem Kar, Gokhan Kocaman, Farrukh İbrahimov, Serkan Enön, Erdal Cosgun, Atilla Halil Elhan
Cancer Medicine | August 2023
CRM1 expression: association with high prognostic value in laryngeal cancer
Talih Ozdas, Sibel Ozdas, Ipek Canatar, Erdal Cosgun, Burcu Elif Senyurt, Orhan Gorgulu
Turkish Journal of Medical Sciences | August 2023, Vol 53(4)
Hybrid model approach in data mining
Batuhan Bakirarar, Erdal Cosgun, Atilla Halil Elhan
Communications in Statistics - Simulation and Computation | January 2023
A cloud-based pipeline for analysis of FHIR and long-read data
Tim Dunn, Erdal Cosgun
Bioinformatics Advances | January 2023
The Effect of Missing Data Mechanisms on Deep Learning in Binary Classification: A Simulation Study
Ebru Ozturk, Yagmur Zengin, Merve KASIKCI, Erdal Cosgun
Turkiye Klinikleri Journal of Biostatistics | December 2022, Vol 15(1)
Classification Performance Comparison of Deep Learning and Classical Data Mining Methods on RNA-Seq Dataset
Merve Kasikci, Erdal Cosgun, Erdem Karabulut
International Journal of Data Mining and Bioinformatics | September 2022
An assessment of emergency department visits for cardiovascular diseases in the early phase of the COVID-19 pandemic in Istanbul
Yesim Yasin, Serpil Yaylaci, Berna Eren, Erdal Cosgun
November 2021, Vol 17(6): pp. 103-111
Correlation of anatomical involvement patterns of insular gliomas with subnetworks of the limbic system
Ege Ülgen, Fuat Kaan Aras, Erdal Cosgun, Ayça Erşen-Danyeli, Alp Dinçer, M İmre Usseli, Koray Özduman, M Necmettin Pamir
Journal of Neurosurgery | July 2021, pp. 1-12
Effect of Missing Data Imputation on Deep Learning Prediction Performance for Vesicoureteral Reflux and Recurrent Urinary Tract Infection Clinical Study
Timur Kose, Su Ozgur, Erdal Cosgun (ercosgun), Ahmet Keskinoglu, Pembe Keskinoglu
Biomed Research International | July 2020, Vol 2020(15): pp. 1-15
Evaluation of Machine Learning and Deep Learning Method’s Performance on Different Sample Size Scenarios for Genome-wide Association Studies
Ragıp Onur OZTORNACI, Erdal Cosgun (ercosgun), Bahar TASDELEN
Turkiye Klinikleri Journal of Biostatistics | May 2020, Vol 2020: pp. 1-7
Antenatal corticosteroids for women at risk of preterm delivery: the “Emperor’s New Clothes” tale in medical practice
Mehmet Sinan Beksac, Ayse Korkmaz, Taner Kasapoglu, Pinar Ozdemir, Erdal Cosgun, Atakan Tanacan
The Journal of Maternal-Fetal & Neonatal Medicine | February 2020, Vol 2020(X)
Exploring the Consistency of the Quality Scores with Machine Learning for Next-Generation Sequencing Experiments.
Erdal Cosgun, Min Oh
BioMed Research International | February 2020, Vol 2020: pp. 8531502-6
Turkish version of the Yale Food Addiction Scale: preliminary results of factorial structure, reliability, and construct validity
Zehra Buyuktuncer, Asli Akyol, Aylin Ayaz, Reyhan Nergiz-Unal, Burcu Aksoy, Erdal Cosgun (ercosgun), et al.
Journal of Health, Population and Nutrition | December 2019, Vol 38(42)
Is the pathological-grade relevant in “IDH-wild type, TERT-mutant” diffuse-gliomas? An analysis in 147 patients
A E Danyeli, C B Akyerli, A Dinçer, Erdal Cosgun, U Abacıoğlu, M Pamir, K Özduman
14th Meeting of the European Association of Neuro-Oncology | September 2019
PKNOX2 expression and regulation in the bone marrow mesenchymal stem cells of Fanconi anemia patients and healthy donors
Ilgin Cagnan, Erdal Cosgun, Ozlen Konu, Duygu Uckan, Aysen Gunel Ozcan
Vol.:(0123456789) 1 3 Molecular Biology Reports | December 2018
Exploring the consistency of the quality scores with machine learning for next-generation sequencing experiments (2018)
Min Oh, Erdal Cosgun
American Society of Human Genetics 2018 | October 2018
PgmNr 1480/T
Use of telomerase promoter mutations to mark specific molecular subsets with reciprocal clinical behavior in IDH mutant and IDH wild-type diffuse gliomas
Cemaliye B. Akyerli, Şirin Yüksel, Özge Can, E. Zeynep Erson-Omay, Yavuz Oktay, Erdal Cosgun, Ege Ülgen, Yiğit Erdemgil, Aydın Sav, Andreas von Deimling, Murat Günel, M. Cengiz Yakıcıer, M. Necmettin Pamir, Koray Özduman
J Neurosurg | June 2017, pp. 1:13
PKNOX2 regulated by TGFbeta is a new candidate to explain bone marrow failure in fanconi anemia
Ilgin Cagnan, Fatima Aerts Kaya, Erdal Cosgun, Ozlen Konu, Duygu Uckan Cetinkaya, Aysen Gunel Ozcan
Experimental Hematology | June 2017, Vol 53: pp. S136
New Generation of Machine Learning: Analysis of Single Nucleotide Polymorphism Data with Deep Learning
18th National Biostatistics Conference | October 2016
Effect of Temperature and Humidity on Serum Prostate Specific Antigen Levels in Asymptomatic Male Population
Murat Tugrul Eren, Hakan Ozveri, Erdal Cosgun
Journal of Urological Surgery | September 2016, Vol 4: pp. 127-132
Methylenetetrahydrofolate Reductase Enzyme Mutations and Relationship of Homocysteine Vitamin B12 and Folate Blood Levels
Tuba Günebak Şahin, Berkan Sayal, Erdal Cosgun, Tanju Besler, Sinan Beksaç
Gynecology Obstetrics & Reproductive Medicine | May 2016, Vol 19
Early Onset of Atherosclerosis of The Carotid Bifurcation in Newborn Cadavers
Bahar Uslu, Yusuf Ozgur Cakmak, Umit Sehirli, Elif Nedret Keskinoz, Erdal Cosgun, Serap Arbak, Aymelek Yalin
J Clin Diagn Res | May 2016, Vol 10
Push-out bond strength and dentinal tubule penetration of different root canal sealers used with coated core materials
Derya Deniz Sungurlu, Nuhan Purali, Erdal Cosgun (ercosgun), S.Calt
Restor Dent Endod | May 2016, Vol 41: pp. 114-120
Evaluation of the origin and branching patterns of the iliolumbar artery and its implications on pelvic and vertebral surgery
Turan Koc, Ismail Y. Gilan, Mustafa Aktekin, Zeliha Kurtoglu, Ahmet Dagtekin, Gunes Aytac, Erdal Cosgun
Saudi Med J. | April 2016, Vol 37: pp. 457-460
Comparison of classical and clustering based reference interval calculations for Aspartate Aminotransferase, Alanine Aminotransferase and Gamma-Glutamyl Transferase in serum
Erdal Cosgun, Deniz Ilhan Topcu, Yahya Laleli
Turkish Journal of Biochemistry | October 2015, Vol 40(5)
Functional disability in Alzheimer disease: a validation study of the Turkish version of the disability assessment for dementia scale
Mukaddes Tozlu, Cankurtaran,M., Yavuz,BB., Cankurtaran,ES., Kutluer,I., Erkek,BM., Halil,M., Ulger,Z., Erdal Cosgun, Ariogul,S.
J Geriatr Psychiatry Neurol | December 2014, Vol 27: pp. 237-246
The genetic variants of thymic stromal lymphopoietin protein in children with asthma and allergic rhinitis
Birben E, Sahiner UM, Karaaslan C, Yavuz TS, Erdal Cosgun, Kalayci O, Sackesen C
Int Arch Allergy Immunol | February 2014, Vol 163: pp. 185-192
New approach to unsupervised based classification on microarray data
December 2013
PhD Thesis: Hacettepe University | December 2013
Introduction to statistical methods for microRNA analysis
Gokmen Zararsiz, Erdal Cosgun
Chapter Introduction to Statistical Methods for MicroRNA Analysis, in miRNomics: MicroRNA Biology and Computational Analysis
November 2013
Effect of resin shades on opacity of ceramic veneers and polymerization efficiency through ceramics
Ozturk E, Chiang YC, Erdal Cosgun, Bolay S, Hickel R, Ilie N
J Dent. | June 2013, Vol 41: pp. 8-14
Effect of biofilm formation, and biocorrosion on denture base fractures
Sahin C, Ergin A, Ayyildiz S, Erdal Cosgun, Uzun G
J Adv Prosthodont. | May 2013, Vol 52(2): pp. 140-146
Epidemiologic trends in HBV infections at a reference centre in Turkey: an 11-year retrospective analysis
Ergunay K, Balaban Y, Erdal Cosgun, Alp A, Simsek H, Sener B, Tatar G, Hascelik G
Ann Hepatol | September 2012, Vol 11: pp. 672-678
Is gastro-gastric fixation suture necessary in laparoscopic adjustable gastric banding? A prospective randomized study
Avsar FM, Sakcak I, Yildiz BD, Erdal Cosgun, Hamamci EO
J Laparoendosc Adv Surg Tech A | October 2011, Vol 21: pp. 953-956
Management of concurrent cholelithiasis in gastric banding for morbid obesity
Sakcak I, Avsar FM, Erdal Cosgun, Yildiz BD
Eur J Gastroenterol Hepatol | September 2011, Vol 23: pp. 766-769
Does N ratio affect survival in D1 and D2 lymph node dissection for gastric cancer?
Sakcak I, Yildiz BD, Avsar FM, Akturan S, Kilic K, Erdal Cosgun, Hamamci EO
World J Gastroenterol | September 2011, Vol 21: pp. 4007-4012
The New Hybrid Method for Classification of Patients by Gene Expression
Erdal Cosgun, Karaagaoglu E
Biomedical Engineering | 2011
Comparison of the application of low concentration and 80% phenol solution in pilonidal sinus disease
Sakcak I, Avsar FM, Erdal Cosgun
JRSM Short Rep | June 2011, Vol 1: pp. 5
High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans
Erdal Cosgun, Nita Limdi, Christine W.Duarte
Bioonformatics | March 2011, Vol 27(10): pp. 1384-1389
Preoperative Localization in Primary Hyperparathyroidism Surgery
Hamamci EO, Piyade R, Bostanoglu S, Sakcak I, Avsar MF, Erdal Cosgun
Turkiye Klinikleri J Med Sci | March 2011, Vol 31: pp. 686-690
Comparison of early and late changes in immunoglobulins and acute phase reactants after laparoscopic adjustable gastric banding in patients with morbid obesity
Sakcak I, Avsar MF, Hamamci EO, Bostanoglu S, Sonisik M, Bostanoglu A, Erdem NZ, Erdal Cosgun
Obes Surg | May 2010, Vol 20: pp. 610-615
-
Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing
Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez
November 2023
Exploring the Consistency of the Quality Scores with Machine Learning for Next-Generation Sequencing Experiments.
Erdal Cosgun, Min Oh
BioMed Research International | February 2020, Vol 2020: pp. 8531502-6
-
Predicting Students’ STEM Career Interest with Data Mining Approach
Gökhan Akçapınar, Erdal Cosgun (ercosgun)
Educational Technology Theory and Practice | February 2019, Vol 9(1): pp. 73-88
Publications by Type
-
Boosting GPT Models for Genomics Analysis: Generating Trusted Genetic Variant Annotations and Interpretations through RAG and fine-tuning
Shuangjia Lu, Erdal Cosgun
November 2024
Known pathogenic gene variants and new candidates detected in Sudden Unexpected Infant Death using Whole Genome Sequencing
Angela M Bard, Lindsay V Clark, Erdal Cosgun, Kimberly A Aldinger, Andrew Timms, Lely A Quina, Juan M. Lavista Ferres, David Jardine, Elisabeth A Haas, Tatiana M Becker, Chelsea M Pagan, Avni Santani, Diego Martinez, Soumitra Barua, Zakkary McNutt, Addie Nesbitt, Edwin A Mitchell, Jan-Marino Ramirez
November 2023
-
Methodological Research on Radiogenomics: Combining Radiomics and Genomics for Classification
Merve KASIKCI, Erdal Cosgun, Erdem Karabulut
Turkiye Klinikleri Journal of Biostatistics | January 2024, Vol 16(1)
Comparison of deep learning-based recurrence-free survival with random survival forest and Cox proportional hazard models in Stage-I NSCLC patients
Irem Kar, Gokhan Kocaman, Farrukh İbrahimov, Serkan Enön, Erdal Cosgun, Atilla Halil Elhan
Cancer Medicine | August 2023
CRM1 expression: association with high prognostic value in laryngeal cancer
Talih Ozdas, Sibel Ozdas, Ipek Canatar, Erdal Cosgun, Burcu Elif Senyurt, Orhan Gorgulu
Turkish Journal of Medical Sciences | August 2023, Vol 53(4)
Hybrid model approach in data mining
Batuhan Bakirarar, Erdal Cosgun, Atilla Halil Elhan
Communications in Statistics - Simulation and Computation | January 2023
A cloud-based pipeline for analysis of FHIR and long-read data
Tim Dunn, Erdal Cosgun
Bioinformatics Advances | January 2023
The Effect of Missing Data Mechanisms on Deep Learning in Binary Classification: A Simulation Study
Ebru Ozturk, Yagmur Zengin, Merve KASIKCI, Erdal Cosgun
Turkiye Klinikleri Journal of Biostatistics | December 2022, Vol 15(1)
Classification Performance Comparison of Deep Learning and Classical Data Mining Methods on RNA-Seq Dataset
Merve Kasikci, Erdal Cosgun, Erdem Karabulut
International Journal of Data Mining and Bioinformatics | September 2022
An assessment of emergency department visits for cardiovascular diseases in the early phase of the COVID-19 pandemic in Istanbul
Yesim Yasin, Serpil Yaylaci, Berna Eren, Erdal Cosgun
November 2021, Vol 17(6): pp. 103-111
Correlation of anatomical involvement patterns of insular gliomas with subnetworks of the limbic system
Ege Ülgen, Fuat Kaan Aras, Erdal Cosgun, Ayça Erşen-Danyeli, Alp Dinçer, M İmre Usseli, Koray Özduman, M Necmettin Pamir
Journal of Neurosurgery | July 2021, pp. 1-12
Effect of Missing Data Imputation on Deep Learning Prediction Performance for Vesicoureteral Reflux and Recurrent Urinary Tract Infection Clinical Study
Timur Kose, Su Ozgur, Erdal Cosgun (ercosgun), Ahmet Keskinoglu, Pembe Keskinoglu
Biomed Research International | July 2020, Vol 2020(15): pp. 1-15
Evaluation of Machine Learning and Deep Learning Method’s Performance on Different Sample Size Scenarios for Genome-wide Association Studies
Ragıp Onur OZTORNACI, Erdal Cosgun (ercosgun), Bahar TASDELEN
Turkiye Klinikleri Journal of Biostatistics | May 2020, Vol 2020: pp. 1-7
Antenatal corticosteroids for women at risk of preterm delivery: the “Emperor’s New Clothes” tale in medical practice
Mehmet Sinan Beksac, Ayse Korkmaz, Taner Kasapoglu, Pinar Ozdemir, Erdal Cosgun, Atakan Tanacan
The Journal of Maternal-Fetal & Neonatal Medicine | February 2020, Vol 2020(X)
Exploring the Consistency of the Quality Scores with Machine Learning for Next-Generation Sequencing Experiments.
Erdal Cosgun, Min Oh
BioMed Research International | February 2020, Vol 2020: pp. 8531502-6
Turkish version of the Yale Food Addiction Scale: preliminary results of factorial structure, reliability, and construct validity
Zehra Buyuktuncer, Asli Akyol, Aylin Ayaz, Reyhan Nergiz-Unal, Burcu Aksoy, Erdal Cosgun (ercosgun), et al.
Journal of Health, Population and Nutrition | December 2019, Vol 38(42)
Predicting Students’ STEM Career Interest with Data Mining Approach
Gökhan Akçapınar, Erdal Cosgun (ercosgun)
Educational Technology Theory and Practice | February 2019, Vol 9(1): pp. 73-88
PKNOX2 expression and regulation in the bone marrow mesenchymal stem cells of Fanconi anemia patients and healthy donors
Ilgin Cagnan, Erdal Cosgun, Ozlen Konu, Duygu Uckan, Aysen Gunel Ozcan
Vol.:(0123456789) 1 3 Molecular Biology Reports | December 2018
Use of telomerase promoter mutations to mark specific molecular subsets with reciprocal clinical behavior in IDH mutant and IDH wild-type diffuse gliomas
Cemaliye B. Akyerli, Şirin Yüksel, Özge Can, E. Zeynep Erson-Omay, Yavuz Oktay, Erdal Cosgun, Ege Ülgen, Yiğit Erdemgil, Aydın Sav, Andreas von Deimling, Murat Günel, M. Cengiz Yakıcıer, M. Necmettin Pamir, Koray Özduman
J Neurosurg | June 2017, pp. 1:13
PKNOX2 regulated by TGFbeta is a new candidate to explain bone marrow failure in fanconi anemia
Ilgin Cagnan, Fatima Aerts Kaya, Erdal Cosgun, Ozlen Konu, Duygu Uckan Cetinkaya, Aysen Gunel Ozcan
Experimental Hematology | June 2017, Vol 53: pp. S136
Effect of Temperature and Humidity on Serum Prostate Specific Antigen Levels in Asymptomatic Male Population
Murat Tugrul Eren, Hakan Ozveri, Erdal Cosgun
Journal of Urological Surgery | September 2016, Vol 4: pp. 127-132
Methylenetetrahydrofolate Reductase Enzyme Mutations and Relationship of Homocysteine Vitamin B12 and Folate Blood Levels
Tuba Günebak Şahin, Berkan Sayal, Erdal Cosgun, Tanju Besler, Sinan Beksaç
Gynecology Obstetrics & Reproductive Medicine | May 2016, Vol 19
Early Onset of Atherosclerosis of The Carotid Bifurcation in Newborn Cadavers
Bahar Uslu, Yusuf Ozgur Cakmak, Umit Sehirli, Elif Nedret Keskinoz, Erdal Cosgun, Serap Arbak, Aymelek Yalin
J Clin Diagn Res | May 2016, Vol 10
Push-out bond strength and dentinal tubule penetration of different root canal sealers used with coated core materials
Derya Deniz Sungurlu, Nuhan Purali, Erdal Cosgun (ercosgun), S.Calt
Restor Dent Endod | May 2016, Vol 41: pp. 114-120
Evaluation of the origin and branching patterns of the iliolumbar artery and its implications on pelvic and vertebral surgery
Turan Koc, Ismail Y. Gilan, Mustafa Aktekin, Zeliha Kurtoglu, Ahmet Dagtekin, Gunes Aytac, Erdal Cosgun
Saudi Med J. | April 2016, Vol 37: pp. 457-460
Comparison of classical and clustering based reference interval calculations for Aspartate Aminotransferase, Alanine Aminotransferase and Gamma-Glutamyl Transferase in serum
Erdal Cosgun, Deniz Ilhan Topcu, Yahya Laleli
Turkish Journal of Biochemistry | October 2015, Vol 40(5)
Functional disability in Alzheimer disease: a validation study of the Turkish version of the disability assessment for dementia scale
Mukaddes Tozlu, Cankurtaran,M., Yavuz,BB., Cankurtaran,ES., Kutluer,I., Erkek,BM., Halil,M., Ulger,Z., Erdal Cosgun, Ariogul,S.
J Geriatr Psychiatry Neurol | December 2014, Vol 27: pp. 237-246
The genetic variants of thymic stromal lymphopoietin protein in children with asthma and allergic rhinitis
Birben E, Sahiner UM, Karaaslan C, Yavuz TS, Erdal Cosgun, Kalayci O, Sackesen C
Int Arch Allergy Immunol | February 2014, Vol 163: pp. 185-192
Effect of resin shades on opacity of ceramic veneers and polymerization efficiency through ceramics
Ozturk E, Chiang YC, Erdal Cosgun, Bolay S, Hickel R, Ilie N
J Dent. | June 2013, Vol 41: pp. 8-14
Effect of biofilm formation, and biocorrosion on denture base fractures
Sahin C, Ergin A, Ayyildiz S, Erdal Cosgun, Uzun G
J Adv Prosthodont. | May 2013, Vol 52(2): pp. 140-146
Epidemiologic trends in HBV infections at a reference centre in Turkey: an 11-year retrospective analysis
Ergunay K, Balaban Y, Erdal Cosgun, Alp A, Simsek H, Sener B, Tatar G, Hascelik G
Ann Hepatol | September 2012, Vol 11: pp. 672-678
Is gastro-gastric fixation suture necessary in laparoscopic adjustable gastric banding? A prospective randomized study
Avsar FM, Sakcak I, Yildiz BD, Erdal Cosgun, Hamamci EO
J Laparoendosc Adv Surg Tech A | October 2011, Vol 21: pp. 953-956
Management of concurrent cholelithiasis in gastric banding for morbid obesity
Sakcak I, Avsar FM, Erdal Cosgun, Yildiz BD
Eur J Gastroenterol Hepatol | September 2011, Vol 23: pp. 766-769
Does N ratio affect survival in D1 and D2 lymph node dissection for gastric cancer?
Sakcak I, Yildiz BD, Avsar FM, Akturan S, Kilic K, Erdal Cosgun, Hamamci EO
World J Gastroenterol | September 2011, Vol 21: pp. 4007-4012
Comparison of the application of low concentration and 80% phenol solution in pilonidal sinus disease
Sakcak I, Avsar FM, Erdal Cosgun
JRSM Short Rep | June 2011, Vol 1: pp. 5
High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans
Erdal Cosgun, Nita Limdi, Christine W.Duarte
Bioonformatics | March 2011, Vol 27(10): pp. 1384-1389
Preoperative Localization in Primary Hyperparathyroidism Surgery
Hamamci EO, Piyade R, Bostanoglu S, Sakcak I, Avsar MF, Erdal Cosgun
Turkiye Klinikleri J Med Sci | March 2011, Vol 31: pp. 686-690
Comparison of early and late changes in immunoglobulins and acute phase reactants after laparoscopic adjustable gastric banding in patients with morbid obesity
Sakcak I, Avsar MF, Hamamci EO, Bostanoglu S, Sonisik M, Bostanoglu A, Erdem NZ, Erdal Cosgun
Obes Surg | May 2010, Vol 20: pp. 610-615
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New approach to unsupervised based classification on microarray data
December 2013
PhD Thesis: Hacettepe University | December 2013
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Is the pathological-grade relevant in “IDH-wild type, TERT-mutant” diffuse-gliomas? An analysis in 147 patients
A E Danyeli, C B Akyerli, A Dinçer, Erdal Cosgun, U Abacıoğlu, M Pamir, K Özduman
14th Meeting of the European Association of Neuro-Oncology | September 2019
Exploring the consistency of the quality scores with machine learning for next-generation sequencing experiments (2018)
Min Oh, Erdal Cosgun
American Society of Human Genetics 2018 | October 2018
PgmNr 1480/T
New Generation of Machine Learning: Analysis of Single Nucleotide Polymorphism Data with Deep Learning
18th National Biostatistics Conference | October 2016
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The New Hybrid Method for Classification of Patients by Gene Expression
Erdal Cosgun, Karaagaoglu E
Biomedical Engineering | 2011
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Introduction to statistical methods for microRNA analysis
Gokmen Zararsiz, Erdal Cosgun
Chapter Introduction to Statistical Methods for MicroRNA Analysis, in miRNomics: MicroRNA Biology and Computational Analysis
November 2013