Nicolo Fusi

Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology

Eric Zimmermann, Eugene Vorontsov, Julian Viret, Adam Casson, Michal Zelechowski, George Shaikovski, Neil Tenenholtz, Jimmy Hall, Thomas J. Fuchs, Nicolo Fusi, Siqi Liu, Kristen Severson

July 2024

Publication

Tag-LLM: Repurposing General-Purpose LLMs for Specialized Domains

Junhong Shen, Neil Tenenholtz, James Hall, David Alvarez-Melis, Nicolo Fusi

ICML 2024 | February 2024

DOI Publication Publication

Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine

Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz

November 2023

Publication

Virchow: A Million-Slide Digital Pathology Foundation Model

Eugene Vorontsov, A. Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Siqi Liu, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Jeremy D. Kun, Matthew C. H. Le, Jan H Bernhard, R. Godrich, Gerard Oakley, Ewan Millar, Matthew G Hanna, J. Retamero, William A. Moye, Razik Yousfi, Christopher Kanan, D. Klimstra, B. Rothrock, Thomas J. Fuchs

September 2023

DOI Publication Publication Publication

Dataset Dynamics via Gradient Flows in Probability Space

David Alvarez-Melis, Nicolo Fusi

ICML 2021 | July 2021

Publication

Hant: Hardware-Aware Network Transformation

Pavlo Molchanov, Jimmy Hall, Hongxu Yin, Jan Kautz, Nicolo Fusi, Arash Vahdat

July 2021

Publication Project Project

Initialization and Regularization of Factorized Neural Layers

Mikhail Khodak, Neil Tenenholtz, Lester Mackey, Nicolo Fusi

2021 International Conference on Learning Representations | May 2021

Publication Publication Github Project Project

Gradient Flows in Dataset Space

David Alvarez-Melis, Nicolo Fusi

October 2020

Publication Project

Differentiable Feature Selection by Discrete Relaxation

Rishit Sheth, Nicolo Fusi

AISTATS | April 2020

Publication Project

Weighted Meta-Learning

Diana Cai, Rishit Sheth, Lester Mackey, Nicolo Fusi

March 2020

Publication PDF Project

Geometric Dataset Distances via Optimal Transport

David Alvarez-Melis, Nicolo Fusi

NeurIPS 2020 | February 2020

PDF Project

Probabilistic Neural Architecture Search

Francesco Paolo Casale, Jonathan Gordon, Nicolo Fusi

February 2019

Publication Publication Project

Probabilistic Matrix Factorization for Automated Machine Learning

Nicolo Fusi, Rishit Sheth, Melih Huseyn Elibol

NIPS 2018 | December 2018

Preprint posted to Cornell University Library

Publication Publication Project

Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens

Nicolo Fusi, et al

nature biotechnology | October 2017, Vol 36: pp. 179-189

Publication

Predicting off-target effects for end-to-end CRISPR guide design

Nicolo Fusi, Jennifer Listgarten, Melih Elibol, John Doench, Michael Weinstein, Luong Hoang

October 2016

Publication

Flexible Modelling of Genetic Effects on Function-Valued Traits

Nicolo Fusi, Jennifer Listgarten

International Conference on Research in Computational Molecular Biology (RECOMB 2016) | October 2016

Publication DOI

Impact of pre-adapted HIV transmission

Jonathan M. Carlson, Victor Y Du, Nicolo Fusi, Paul A. Goepfert

Nature Medicine | May 2016, Vol 22: pp. 606-613

Publication

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G. Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W. Vaimberg, Katherine F. Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard, Herbert W. Virgin, Jennifer Listgarten, David E. Root

nature biotechnology | January 2016, pp. 184-191

Publication

In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency

Nicolo Fusi, Ian Smith, John Doench, Jennifer Listgarten

MSR-TR-2015-54 | June 2015

Publication Publication

Further Improvements to Linear Mixed Models for Genome-Wide Association Studies

Christian Widmer, Christoph Lippert, Omer Weissbrod, Nicolo Fusi, Carl Kadie, Robert Davidson, Jennifer Listgarten, David Heckerman

October 2014

Publication Publication

Warped linear mixed models for the genetic analysis of transformed phenotypes

Nicolo Fusi, Christoph Lippert

Nature communications | September 2014, Vol 5

Publication Publication

Genetic Analysis of Transformed Phenotypes

Nicolo Fusi, Christoph Lippert, Neil D. Lawrence, Oliver Stegle

February 2014

Publication

Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis

Giovanni Nardo, Raffaele lennaco, Nicolo Fusi, Paul R. Heath, Marianna Marino, Maria C. Trolese, Laura Ferraiuolo, Neil Lawrence, Pamela J. Shaw, Caterina Bendotti

Brain | November 2013, Vol 136(11): pp. 3305-3332

Publication DOI

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

Jennifer Listgarten, Christoph Lippert, Nicolo Fusi, David Heckerman, Jonathan M. Carlson

eLife | October 2013

Publication

Gaussian Processes for Big Data

James Hensman, Nicolo Fusi, Neil D. Lawrence

UAI-P-2013-PG-282-290 | September 2013

Published by Twenty-Ninth Conference on Uncertainty in Artificial Intelligence (UAI2013)

Publication

Detecting regulatory gene–environment interactions with unmeasured environmental factors

Nicolo Fusi, Christoph Lippert, Karsten Borgwardt, Neil D. Lawrence, Oliver Stegle

Bioinformatics | June 2013, Vol 29(11): pp. 1382-1389

Publication

Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity

Alice Brockington, Ke Ning, Paul R. Heath, Elizabeth Wood, Janine Kirby, Nicolo Fusi, Neil Lawrence, Stephen B. Wharton, Paul G. Ince, Pamela J. Shaw

Acta Neuropathologica | January 2013, Vol 125(1): pp. 95-109

Publication DOI

Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies

Nicolo Fusi, Oliver Stegle, Neil D. Lawrence

PLOS Computational Biology | January 2012

Publication Publication

156 Motor neurones subtypes resistant to degeneration in amyotrophic lateral sclerosis show distinct synaptic characteristics across species

Nicolo Fusi

Journal of Neurology, Neurosurgery & Psychiatry | January 2012, Vol 83(3)

DOI

Accurate modeling of confounding variation in eQTL studies leads to a great increase in power to detect trans-regulatory effects

Nicolo Fusi

Nature Precedings | June 2011

Publication

Intrusion Detection via Artificial Immune System: a Performance-based Approach

Andrea Visconti, Nicolo Fusi, Hooman Tahayori

IFIP International Conference on Biologically Inspired Collaborative Computing | October 2008

Publication

Tag-LLM: Repurposing General-Purpose LLMs for Specialized Domains

Junhong Shen, Neil Tenenholtz, James Hall, David Alvarez-Melis, Nicolo Fusi

ICML 2024 | February 2024

DOI Publication Publication

Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine

Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz

November 2023

Publication

Virchow: A Million-Slide Digital Pathology Foundation Model

Eugene Vorontsov, A. Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Siqi Liu, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Jeremy D. Kun, Matthew C. H. Le, Jan H Bernhard, R. Godrich, Gerard Oakley, Ewan Millar, Matthew G Hanna, J. Retamero, William A. Moye, Razik Yousfi, Christopher Kanan, D. Klimstra, B. Rothrock, Thomas J. Fuchs

September 2023

DOI Publication Publication Publication

Dataset Dynamics via Gradient Flows in Probability Space

David Alvarez-Melis, Nicolo Fusi

ICML 2021 | July 2021

Publication

Hant: Hardware-Aware Network Transformation

Pavlo Molchanov, Jimmy Hall, Hongxu Yin, Jan Kautz, Nicolo Fusi, Arash Vahdat

July 2021

Publication Project Project

Initialization and Regularization of Factorized Neural Layers

Mikhail Khodak, Neil Tenenholtz, Lester Mackey, Nicolo Fusi

2021 International Conference on Learning Representations | May 2021

Publication Publication Github Project Project

Gradient Flows in Dataset Space

David Alvarez-Melis, Nicolo Fusi

October 2020

Publication Project

Differentiable Feature Selection by Discrete Relaxation

Rishit Sheth, Nicolo Fusi

AISTATS | April 2020

Publication Project

Weighted Meta-Learning

Diana Cai, Rishit Sheth, Lester Mackey, Nicolo Fusi

March 2020

Publication PDF Project

Geometric Dataset Distances via Optimal Transport

David Alvarez-Melis, Nicolo Fusi

NeurIPS 2020 | February 2020

PDF Project

Probabilistic Neural Architecture Search

Francesco Paolo Casale, Jonathan Gordon, Nicolo Fusi

February 2019

Publication Publication Project

Probabilistic Matrix Factorization for Automated Machine Learning

Nicolo Fusi, Rishit Sheth, Melih Huseyn Elibol

NIPS 2018 | December 2018

Preprint posted to Cornell University Library

Publication Publication Project

In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency

Nicolo Fusi, Ian Smith, John Doench, Jennifer Listgarten

MSR-TR-2015-54 | June 2015

Publication Publication

Further Improvements to Linear Mixed Models for Genome-Wide Association Studies

Christian Widmer, Christoph Lippert, Omer Weissbrod, Nicolo Fusi, Carl Kadie, Robert Davidson, Jennifer Listgarten, David Heckerman

October 2014

Publication Publication

Gaussian Processes for Big Data

James Hensman, Nicolo Fusi, Neil D. Lawrence

UAI-P-2013-PG-282-290 | September 2013

Published by Twenty-Ninth Conference on Uncertainty in Artificial Intelligence (UAI2013)

Publication

156 Motor neurones subtypes resistant to degeneration in amyotrophic lateral sclerosis show distinct synaptic characteristics across species

Nicolo Fusi

Journal of Neurology, Neurosurgery & Psychiatry | January 2012, Vol 83(3)

DOI

Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology

Eric Zimmermann, Eugene Vorontsov, Julian Viret, Adam Casson, Michal Zelechowski, George Shaikovski, Neil Tenenholtz, Jimmy Hall, Thomas J. Fuchs, Nicolo Fusi, Siqi Liu, Kristen Severson

July 2024

Publication

Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine

Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz

November 2023

Publication

Virchow: A Million-Slide Digital Pathology Foundation Model

Eugene Vorontsov, A. Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Siqi Liu, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Jeremy D. Kun, Matthew C. H. Le, Jan H Bernhard, R. Godrich, Gerard Oakley, Ewan Millar, Matthew G Hanna, J. Retamero, William A. Moye, Razik Yousfi, Christopher Kanan, D. Klimstra, B. Rothrock, Thomas J. Fuchs

September 2023

DOI Publication Publication Publication

Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens

Nicolo Fusi, et al

nature biotechnology | October 2017, Vol 36: pp. 179-189

Publication

Predicting off-target effects for end-to-end CRISPR guide design

Nicolo Fusi, Jennifer Listgarten, Melih Elibol, John Doench, Michael Weinstein, Luong Hoang

October 2016

Publication

Flexible Modelling of Genetic Effects on Function-Valued Traits

Nicolo Fusi, Jennifer Listgarten

International Conference on Research in Computational Molecular Biology (RECOMB 2016) | October 2016

Publication DOI

Impact of pre-adapted HIV transmission

Jonathan M. Carlson, Victor Y Du, Nicolo Fusi, Paul A. Goepfert

Nature Medicine | May 2016, Vol 22: pp. 606-613

Publication

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G. Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W. Vaimberg, Katherine F. Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard, Herbert W. Virgin, Jennifer Listgarten, David E. Root

nature biotechnology | January 2016, pp. 184-191

Publication

In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency

Nicolo Fusi, Ian Smith, John Doench, Jennifer Listgarten

MSR-TR-2015-54 | June 2015

Publication Publication

Warped linear mixed models for the genetic analysis of transformed phenotypes

Nicolo Fusi, Christoph Lippert

Nature communications | September 2014, Vol 5

Publication Publication

Genetic Analysis of Transformed Phenotypes

Nicolo Fusi, Christoph Lippert, Neil D. Lawrence, Oliver Stegle

February 2014

Publication

Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis

Giovanni Nardo, Raffaele lennaco, Nicolo Fusi, Paul R. Heath, Marianna Marino, Maria C. Trolese, Laura Ferraiuolo, Neil Lawrence, Pamela J. Shaw, Caterina Bendotti

Brain | November 2013, Vol 136(11): pp. 3305-3332

Publication DOI

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

Jennifer Listgarten, Christoph Lippert, Nicolo Fusi, David Heckerman, Jonathan M. Carlson

eLife | October 2013

Publication

Detecting regulatory gene–environment interactions with unmeasured environmental factors

Nicolo Fusi, Christoph Lippert, Karsten Borgwardt, Neil D. Lawrence, Oliver Stegle

Bioinformatics | June 2013, Vol 29(11): pp. 1382-1389

Publication

Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity

Alice Brockington, Ke Ning, Paul R. Heath, Elizabeth Wood, Janine Kirby, Nicolo Fusi, Neil Lawrence, Stephen B. Wharton, Paul G. Ince, Pamela J. Shaw

Acta Neuropathologica | January 2013, Vol 125(1): pp. 95-109

Publication DOI

Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies

Nicolo Fusi, Oliver Stegle, Neil D. Lawrence

PLOS Computational Biology | January 2012

Publication Publication

Accurate modeling of confounding variation in eQTL studies leads to a great increase in power to detect trans-regulatory effects

Nicolo Fusi

Nature Precedings | June 2011

Publication

Intrusion Detection via Artificial Immune System: a Performance-based Approach

Andrea Visconti, Nicolo Fusi, Hooman Tahayori

IFIP International Conference on Biologically Inspired Collaborative Computing | October 2008

Publication

Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology

Eric Zimmermann, Eugene Vorontsov, Julian Viret, Adam Casson, Michal Zelechowski, George Shaikovski, Neil Tenenholtz, Jimmy Hall, Thomas J. Fuchs, Nicolo Fusi, Siqi Liu, Kristen Severson

July 2024

Publication

Hant: Hardware-Aware Network Transformation

Pavlo Molchanov, Jimmy Hall, Hongxu Yin, Jan Kautz, Nicolo Fusi, Arash Vahdat

July 2021

Publication Project Project

Initialization and Regularization of Factorized Neural Layers

Mikhail Khodak, Neil Tenenholtz, Lester Mackey, Nicolo Fusi

2021 International Conference on Learning Representations | May 2021

Publication Publication Github Project Project

Gradient Flows in Dataset Space

David Alvarez-Melis, Nicolo Fusi

October 2020

Publication Project

Geometric Dataset Distances via Optimal Transport

David Alvarez-Melis, Nicolo Fusi

NeurIPS 2020 | February 2020

PDF Project

Warped linear mixed models for the genetic analysis of transformed phenotypes

Nicolo Fusi, Christoph Lippert

Nature communications | September 2014, Vol 5

Publication Publication

Gradient Flows in Dataset Space

David Alvarez-Melis, Nicolo Fusi

October 2020

Publication Project

In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency

Nicolo Fusi, Ian Smith, John Doench, Jennifer Listgarten

MSR-TR-2015-54 | June 2015

Publication Publication

Warped linear mixed models for the genetic analysis of transformed phenotypes

Nicolo Fusi, Christoph Lippert

Nature communications | September 2014, Vol 5

Publication Publication

Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology

Eric Zimmermann, Eugene Vorontsov, Julian Viret, Adam Casson, Michal Zelechowski, George Shaikovski, Neil Tenenholtz, Jimmy Hall, Thomas J. Fuchs, Nicolo Fusi, Siqi Liu, Kristen Severson

July 2024

Publication

Virchow: A Million-Slide Digital Pathology Foundation Model

Eugene Vorontsov, A. Bozkurt, Adam Casson, George Shaikovski, Michal Zelechowski, Siqi Liu, Kristen Severson, Eric Zimmermann, James Hall, Neil Tenenholtz, Nicolo Fusi, Philippe Mathieu, Alexander van Eck, Donghun Lee, Julian Viret, Eric Robert, Yi Kan Wang, Jeremy D. Kun, Matthew C. H. Le, Jan H Bernhard, R. Godrich, Gerard Oakley, Ewan Millar, Matthew G Hanna, J. Retamero, William A. Moye, Razik Yousfi, Christopher Kanan, D. Klimstra, B. Rothrock, Thomas J. Fuchs

September 2023

DOI Publication Publication Publication

Hant: Hardware-Aware Network Transformation

Pavlo Molchanov, Jimmy Hall, Hongxu Yin, Jan Kautz, Nicolo Fusi, Arash Vahdat

July 2021

Publication Project Project

Gradient Flows in Dataset Space

David Alvarez-Melis, Nicolo Fusi

October 2020

Publication Project

Weighted Meta-Learning

Diana Cai, Rishit Sheth, Lester Mackey, Nicolo Fusi

March 2020

Publication PDF Project

Probabilistic Neural Architecture Search

Francesco Paolo Casale, Jonathan Gordon, Nicolo Fusi

February 2019

Publication Publication Project

Tag-LLM: Repurposing General-Purpose LLMs for Specialized Domains

Junhong Shen, Neil Tenenholtz, James Hall, David Alvarez-Melis, Nicolo Fusi

ICML 2024 | February 2024

DOI Publication Publication

Dataset Dynamics via Gradient Flows in Probability Space

David Alvarez-Melis, Nicolo Fusi

ICML 2021 | July 2021

Publication

Initialization and Regularization of Factorized Neural Layers

Mikhail Khodak, Neil Tenenholtz, Lester Mackey, Nicolo Fusi

2021 International Conference on Learning Representations | May 2021

Publication Publication Github Project Project

Differentiable Feature Selection by Discrete Relaxation

Rishit Sheth, Nicolo Fusi

AISTATS | April 2020

Publication Project

Geometric Dataset Distances via Optimal Transport

David Alvarez-Melis, Nicolo Fusi

NeurIPS 2020 | February 2020

PDF Project

Probabilistic Matrix Factorization for Automated Machine Learning

Nicolo Fusi, Rishit Sheth, Melih Huseyn Elibol

NIPS 2018 | December 2018

Preprint posted to Cornell University Library

Publication Publication Project

Flexible Modelling of Genetic Effects on Function-Valued Traits

Nicolo Fusi, Jennifer Listgarten

International Conference on Research in Computational Molecular Biology (RECOMB 2016) | October 2016

Publication DOI

Accurate modeling of confounding variation in eQTL studies leads to a great increase in power to detect trans-regulatory effects

Nicolo Fusi

Nature Precedings | June 2011

Publication

Intrusion Detection via Artificial Immune System: a Performance-based Approach

Andrea Visconti, Nicolo Fusi, Hooman Tahayori

IFIP International Conference on Biologically Inspired Collaborative Computing | October 2008

Publication

Can Generalist Foundation Models Outcompete Special-Purpose Tuning? Case Study in Medicine

Harsha Nori, Yin Tat Lee, Sheng Zhang, Dean Carignan, Richard Edgar, Nicolo Fusi, Nicholas King, Jonathan Larson, Yuanzhi Li, Weishung Liu, Renqian Luo, Scott Mayer McKinney, Robert Osazuwa Ness, Hoifung Poon, Tao Qin, Naoto Usuyama, Chris White, Eric Horvitz

November 2023

Publication

Genetic Analysis of Transformed Phenotypes

Nicolo Fusi, Christoph Lippert, Neil D. Lawrence, Oliver Stegle

February 2014

Publication

Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens

Nicolo Fusi, et al

nature biotechnology | October 2017, Vol 36: pp. 179-189

Publication

Predicting off-target effects for end-to-end CRISPR guide design

Nicolo Fusi, Jennifer Listgarten, Melih Elibol, John Doench, Michael Weinstein, Luong Hoang

October 2016

Publication

Impact of pre-adapted HIV transmission

Jonathan M. Carlson, Victor Y Du, Nicolo Fusi, Paul A. Goepfert

Nature Medicine | May 2016, Vol 22: pp. 606-613

Publication

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G. Doench, Nicolo Fusi, Meagan Sullender, Mudra Hegde, Emma W. Vaimberg, Katherine F. Donovan, Ian Smith, Zuzana Tothova, Craig Wilen, Robert Orchard, Herbert W. Virgin, Jennifer Listgarten, David E. Root

nature biotechnology | January 2016, pp. 184-191

Publication

Further Improvements to Linear Mixed Models for Genome-Wide Association Studies

Christian Widmer, Christoph Lippert, Omer Weissbrod, Nicolo Fusi, Carl Kadie, Robert Davidson, Jennifer Listgarten, David Heckerman

October 2014

Publication Publication

Warped linear mixed models for the genetic analysis of transformed phenotypes

Nicolo Fusi, Christoph Lippert

Nature communications | September 2014, Vol 5

Publication Publication

Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis

Giovanni Nardo, Raffaele lennaco, Nicolo Fusi, Paul R. Heath, Marianna Marino, Maria C. Trolese, Laura Ferraiuolo, Neil Lawrence, Pamela J. Shaw, Caterina Bendotti

Brain | November 2013, Vol 136(11): pp. 3305-3332

Publication DOI

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

Jennifer Listgarten, Christoph Lippert, Nicolo Fusi, David Heckerman, Jonathan M. Carlson

eLife | October 2013

Publication

Detecting regulatory gene–environment interactions with unmeasured environmental factors

Nicolo Fusi, Christoph Lippert, Karsten Borgwardt, Neil D. Lawrence, Oliver Stegle

Bioinformatics | June 2013, Vol 29(11): pp. 1382-1389

Publication

Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity

Alice Brockington, Ke Ning, Paul R. Heath, Elizabeth Wood, Janine Kirby, Nicolo Fusi, Neil Lawrence, Stephen B. Wharton, Paul G. Ince, Pamela J. Shaw

Acta Neuropathologica | January 2013, Vol 125(1): pp. 95-109

Publication DOI

Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies

Nicolo Fusi, Oliver Stegle, Neil D. Lawrence

PLOS Computational Biology | January 2012

Publication Publication

156 Motor neurones subtypes resistant to degeneration in amyotrophic lateral sclerosis show distinct synaptic characteristics across species

Nicolo Fusi

Journal of Neurology, Neurosurgery & Psychiatry | January 2012, Vol 83(3)

DOI

In Silico Predictive Modeling of CRISPR/Cas9 guide efficiency

Nicolo Fusi, Ian Smith, John Doench, Jennifer Listgarten

MSR-TR-2015-54 | June 2015

Publication Publication

Gaussian Processes for Big Data

James Hensman, Nicolo Fusi, Neil D. Lawrence

UAI-P-2013-PG-282-290 | September 2013

Published by Twenty-Ninth Conference on Uncertainty in Artificial Intelligence (UAI2013)

Publication