Jake Smith

A generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie

Nature | January 2025

Publication

Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system

Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith

Nature Communications | September 2024, Vol 15: pp. 8067

DOI Publication Publication Project

MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures

Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu

May 2024

Publication

Recyclable vitrimer-based printed circuit boards for sustainable electronics

Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer

Nature Sustainability | April 2024

Publication Project

Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling

Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth

March 2024

DOI Publication Project

MatterGen: a generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie

December 2023

PDF Publication Video Video Video Github

MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith

ICLR 2024 | October 2023

Publication Github

What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization

Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad

ACL 2023 | July 2023

Publication

Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate

Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss

ACS Synthetic Biology | May 2023

Publication Project

Scaling DNA data storage with nanoscale electrode wells

Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss

Science Advances | November 2021

Publication Project

Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA

Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss

Electronics Goes Green 2020 | September 2020

Publication Project

A generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie

Nature | January 2025

Publication

MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures

Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu

May 2024

Publication

Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling

Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth

March 2024

DOI Publication Project

MatterGen: a generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie

December 2023

PDF Publication Video Video Video Github

MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith

ICLR 2024 | October 2023

Publication Github

A generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie

Nature | January 2025

Publication

What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization

Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad

ACL 2023 | July 2023

Publication

Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system

Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith

Nature Communications | September 2024, Vol 15: pp. 8067

DOI Publication Publication Project

Recyclable vitrimer-based printed circuit boards for sustainable electronics

Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer

Nature Sustainability | April 2024

Publication Project

Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate

Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss

ACS Synthetic Biology | May 2023

Publication Project

Scaling DNA data storage with nanoscale electrode wells

Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss

Science Advances | November 2021

Publication Project

Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA

Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss

Electronics Goes Green 2020 | September 2020

Publication Project

Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system

Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith

Nature Communications | September 2024, Vol 15: pp. 8067

DOI Publication Publication Project

Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate

Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss

ACS Synthetic Biology | May 2023

Publication Project

Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system

Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith

Nature Communications | September 2024, Vol 15: pp. 8067

DOI Publication Publication Project

Recyclable vitrimer-based printed circuit boards for sustainable electronics

Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer

Nature Sustainability | April 2024

Publication Project

Scaling DNA data storage with nanoscale electrode wells

Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss

Science Advances | November 2021

Publication Project

Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling

Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth

March 2024

DOI Publication Project

Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA

Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss

Electronics Goes Green 2020 | September 2020

Publication Project

What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization

Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad

ACL 2023 | July 2023

Publication

Scaling DNA data storage with nanoscale electrode wells

Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss

Science Advances | November 2021

Publication Project

Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA

Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss

Electronics Goes Green 2020 | September 2020

Publication Project

A generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Zilong Wang, Aliaksandra Shysheya, Jonathan Crabbé, Shoko Ueda, Roberto Sordillo, Lixin Sun, Jake Smith, Bichlien Nguyen, Hannes Schulz, Sarah Lewis, Chin-Wei Huang, Ziheng Lu, Yichi Zhou, Han Yang, Hongxia Hao, Jielan Li, Chunlei Yang, Wenjie Li, Ryota Tomioka, Tian Xie

Nature | January 2025

Publication

Evaluating the risk of data loss due to particle radiation damage in a DNA data storage system

Christopher N. Takahashi, David P. Ward, Carlo Cazzaniga, Christopher D. Frost, Paolo Rech, Kumkum Ganguly, Sean Blanchard, Steve Wender, Bichlien Nguyen, Jake Smith

Nature Communications | September 2024, Vol 15: pp. 8067

DOI Publication Publication Project

Recyclable vitrimer-based printed circuit boards for sustainable electronics

Zhihan Zhang, Agni K. Biswal, Ankush Nandi, Kali Frost, Jake Smith, Bichlien Nguyen, Shwetak Patel, Aniruddh Vashisth, Vikram Iyer

Nature Sustainability | April 2024

Publication Project

Spatially Selective Electrochemical Cleavage of a Polymerase-Nucleotide Conjugate

Jake Smith, Bichlien Nguyen, Rob Carlson, Jeffrey G. Bertram, Sebastian Palluk, Daniel H. Arlow, Karin Strauss

ACS Synthetic Biology | May 2023

Publication Project

Scaling DNA data storage with nanoscale electrode wells

Bichlien Nguyen, Christopher Takahashi, Gagan Gupta, Jake Smith, Richard Rouse, Paul Berndt, Sergey Yekhanin, David Ward, Siena Ang, Patrick Garvan, Hsing-Yeh Parker, Rob Carlson, Douglas Carmean, Luis Ceze, Karin Strauss

Science Advances | November 2021

Publication Project

MatterSim: A Deep Learning Atomistic Model Across Elements, Temperatures and Pressures

Han Yang, Chenxi Hu, Yichi Zhou, Xixian Liu, Yu Shi, Jielan Li, Guanzhi Li, Zekun Chen, Shuizhou Chen, Claudio Zeni, Matthew Horton, Robert Pinsler, Andrew Fowler, Daniel Zügner, Tianyidan Xie, Jake Smith, Lixin Sun, Qian Wang, Lingyu Kong, Chang Liu, Hongxia Hao, Ziheng Lu

May 2024

Publication

Inverse Design of Vitrimeric Polymers by Molecular Dynamics and Generative Modeling

Yiwen Zheng, Prakash Thakolkaran, Jake Smith, Ziheng Lu, Shuxin Zheng, Bichlien Nguyen, Siddhant Kumar, Aniruddh Vashisth

March 2024

DOI Publication Project

MatterGen: a generative model for inorganic materials design

Claudio Zeni, Robert Pinsler, Daniel Zügner, Andrew Fowler, Matthew Horton, Xiang Fu, Sasha Shysheya, Jonathan Crabbé, Lixin Sun, Jake Smith, Ryota Tomioka, Tian Xie

December 2023

PDF Publication Video Video Video Github

MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Xiang Fu, Tian Xie, Andrew S. Rosen, Tommi Jaakkola, Jake Smith

ICLR 2024 | October 2023

Publication Github

What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization

Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad

ACL 2023 | July 2023

Publication

Architecting Datacenters for Sustainability: Greener Data Storage using Synthetic DNA

Bichlien Nguyen, Julie Sinistore, Jake Smith, Praneet S. Arshi, Lauren M. Johnson, Tim Kidman, T.J. diCaprio, Doug Carmean, Karin Strauss

Electronics Goes Green 2020 | September 2020

Publication Project