Kenji Takeda

OSAIRIS: Lessons Learned from the Hospital-Based Implementation and Evaluation of an Open-Source Deep-Learning Model for Radiotherapy Image Segmentation

Alexandra Constantinou, Andrew Hoole, David C. Wong, G. S. Sagoo, Javier Alvarez-Valle, Kenji Takeda, Tom Griffiths, Amy Edwards, Andrew Robinson, Liam Stubbington, Niall Bolger, Yvonne Rimmer, Thiraviyam Elumalai, K. T. Jayaprakash, Richard Benson, Ian Gleeson, Rebecca Sen, Louisa Stockton, Tian Wang, Stephanie Brown, E. Gatfield, C. Sanghera, Alexandros Mourounas, Barry Evans, Anita Anthony, Renteng Hou, Marian Toomey, K. Wildschut, Aviva Grisby, Gill Barnett, Rose McMullen, Raj Jena

Clinical Oncology | October 2024

DOI Github Github Github Github Project Project

Intraoperative prediction of post-anaesthesia care unit hypotension

Konstantina Palla, Stephanie Hyland, Karen Posner, Pratik Ghosh, Bala Nair, Melissa Bristow, Yoana Paleva, Ben Williams, Christine Fong, Wil Van Cleve, Dustin R Long, Ronald Pauldine, Kenton O'Hara, Kenji Takeda, Monica S Vavilala, Kenton O'Hara

British Journal of Anaesthesia | December 2021

Online ahead of print.

Publication DOI Project

Sociodemographic and clinical features predictive of SARS-CoV-2 test positivity across healthcare visit-types

Jimmy Phuong, Stephanie Hyland, Stephen J. Mooney, Dustin R. Long, Kenji Takeda, Monica S. Vavilala, Kenton O’Hara

PLOS ONE | October 2021

Publication Project

Scalable and efficient whole-exome data processing using workflows on the cloud

J. Cala, E. Marei, Yan Xu, Kenji Takeda, P. Missier

Future Generation Computer Systems | January 2016

Publication Publication

Top Tips to Make Your Research Irreproducible

Neil P. Chue Hong, Tom Crick, Ian P. Gent, Lars Kotthoff, Kenji Takeda

April 2015

Publication

“Share and Enjoy”: Publishing Useful and Usable Scientific Models

Tom Crick, Benjamin A. Hall, Samin Ishtiaq, Kenji Takeda

Recomputability 2014 | December 2014

Publication Publication

Science in the Cloud: Lessons from Three Years of Research Projects on Microsoft Azure

Dennis Gannon, Dan Fay, Daron Green, Wenming Ye, Kenji Takeda

April 2014

Publication

Supporting NGS Pipelines in the cloud

Ignacio Blanquer Blanquer, Goetz Brasche, Jacek Cala, Fabrizio Gagliardi, Dennis Gannon, Hugo Hiden, Hakan Soncu, Kenji Takeda, Andrés Tomás, Simon Woodman

EMBnet.journal | May 2013

Publication

Troubling Trends in Scientific Software Use

Lucas Joppa, Richard Harper, Kenji Takeda, Kenton O'Hara, David Gavaghan, Stephen Emmott

Science | May 2013, Vol 340(6134): pp. 814-815

Publication

Themes in Information-Rich Functional Programming for Internet-Scale Data Sources

Don Syme, Kenji Takeda, , Donna Malayeri,

January 2013

Publication Publication Project Project

Optimizing Peer Review of Software Code – Response

Lucas Joppa, David Gavaghan, Richard Harper, Kenji Takeda, Stephen Emmott

Science | January 2013, Vol 341: pp. 236-237

Publication Publication

Enhancing research publications using Rich Interactive Narratives

Kenji Takeda, Graeme Earl, Jeremy Frey, Simon Keay, Alex D. Wade

Philosophical Transactions of the Royal Society A | December 2012

Publication Project

F#3.0 – Strongly-Typed Language Support for Internet-Scale Information Sources

Don Syme, Keith Battocchi, Kenji Takeda, Donna Malayeri, Jomo Fisher, Jack Hu, Tao Liu, Brian McNamara, Daniel Quirk, Matteo Taveggia, Wonseok Chae, Uladzimir Matsveyeu, Tomas Petricek, ,

MSR-TR-2012-101 | September 2012

Publication Project Project

A generic operational simulation for early design civil unmanned aerial vehicles

Benjamin Schumann, James P. Scanlan, Kenji Takeda

The Third International Conference on Advances in System Simulation, Barcelona, Spain | October 2011

Publication

Scientific Computation and Data Management Using Microsoft Windows Azure

Steven Johnston, Simon Cox, Kenji Takeda

Grid and Cloud Database Management | Published by Springer | 2011 | Grid and Cloud Database Management edition

Publication

Performance of numerical integrators on tangential motion of DEM within implicit flow solvers

G. Jasion, J. Shrimpton, M. Danby, Kenji Takeda

Computers & Chemical Engineering | March 2011

Publication Publication

Evaluating design decisions in real-time using operations modelling

B. Schumann, J. P. Scanlan, K. Takeda, Kenji Takeda

2nd International Air Transport and Operations Symposium, Delft, NL, 28 - 29 Mar 2011. | March 2011

Publication

Multifidelity surrogate modeling of experimental and computational aerodynamic data sets

Yuichi Kuya, Kenji Takeda, Xin Zhang, Alexander Forrester

AIAA Journal | January 2011, Vol 49: pp. 289-298

Publication Publication

Data management for all: the Institutional Data Management Blueprint Project

K. Takeda, M. Brown, S. J. Coles, L. Carr, G. P. Earl, J. G. Frey, P. J. Hancock, W. White, F. Nichols, M. Whitton, H. Gibbs, C. Fowler, P. Wake, S. Patterson, Kenji Takeda

6th International Digital Curation Conference, Chicago, US | December 2010

Publication

Computational analysis of the effect of bogie inclination angle on landing gear noise

K. J. van Mierlo, K. Takeda, E. Peers, Kenji Takeda

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference | January 2010

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference

Publication Publication

Earth system modelling with Windows Workflow Foundation

M. J. Fairman, A. R. Price, G. Xue, M. Molinari, D. A. Nicole, T. M. Lenton, R. Marsh, K. Takeda, S. J. Cox, Kenji Takeda

Future Generation Computer Systems | Published by Elsevier | 2008 | Future Generation Computer Systems edition

Publication Publication

OSAIRIS: Lessons Learned from the Hospital-Based Implementation and Evaluation of an Open-Source Deep-Learning Model for Radiotherapy Image Segmentation

Alexandra Constantinou, Andrew Hoole, David C. Wong, G. S. Sagoo, Javier Alvarez-Valle, Kenji Takeda, Tom Griffiths, Amy Edwards, Andrew Robinson, Liam Stubbington, Niall Bolger, Yvonne Rimmer, Thiraviyam Elumalai, K. T. Jayaprakash, Richard Benson, Ian Gleeson, Rebecca Sen, Louisa Stockton, Tian Wang, Stephanie Brown, E. Gatfield, C. Sanghera, Alexandros Mourounas, Barry Evans, Anita Anthony, Renteng Hou, Marian Toomey, K. Wildschut, Aviva Grisby, Gill Barnett, Rose McMullen, Raj Jena

Clinical Oncology | October 2024

DOI Github Github Github Github Project Project

Intraoperative prediction of post-anaesthesia care unit hypotension

Konstantina Palla, Stephanie Hyland, Karen Posner, Pratik Ghosh, Bala Nair, Melissa Bristow, Yoana Paleva, Ben Williams, Christine Fong, Wil Van Cleve, Dustin R Long, Ronald Pauldine, Kenton O'Hara, Kenji Takeda, Monica S Vavilala, Kenton O'Hara

British Journal of Anaesthesia | December 2021

Online ahead of print.

Publication DOI Project

Sociodemographic and clinical features predictive of SARS-CoV-2 test positivity across healthcare visit-types

Jimmy Phuong, Stephanie Hyland, Stephen J. Mooney, Dustin R. Long, Kenji Takeda, Monica S. Vavilala, Kenton O’Hara

PLOS ONE | October 2021

Publication Project

Scalable and efficient whole-exome data processing using workflows on the cloud

J. Cala, E. Marei, Yan Xu, Kenji Takeda, P. Missier

Future Generation Computer Systems | January 2016

Publication Publication

Supporting NGS Pipelines in the cloud

Ignacio Blanquer Blanquer, Goetz Brasche, Jacek Cala, Fabrizio Gagliardi, Dennis Gannon, Hugo Hiden, Hakan Soncu, Kenji Takeda, Andrés Tomás, Simon Woodman

EMBnet.journal | May 2013

Publication

Intraoperative prediction of post-anaesthesia care unit hypotension

Konstantina Palla, Stephanie Hyland, Karen Posner, Pratik Ghosh, Bala Nair, Melissa Bristow, Yoana Paleva, Ben Williams, Christine Fong, Wil Van Cleve, Dustin R Long, Ronald Pauldine, Kenton O'Hara, Kenji Takeda, Monica S Vavilala, Kenton O'Hara

British Journal of Anaesthesia | December 2021

Online ahead of print.

Publication DOI Project

Evaluating design decisions in real-time using operations modelling

B. Schumann, J. P. Scanlan, K. Takeda, Kenji Takeda

2nd International Air Transport and Operations Symposium, Delft, NL, 28 - 29 Mar 2011. | March 2011

Publication

Top Tips to Make Your Research Irreproducible

Neil P. Chue Hong, Tom Crick, Ian P. Gent, Lars Kotthoff, Kenji Takeda

April 2015

Publication

“Share and Enjoy”: Publishing Useful and Usable Scientific Models

Tom Crick, Benjamin A. Hall, Samin Ishtiaq, Kenji Takeda

Recomputability 2014 | December 2014

Publication Publication

Supporting NGS Pipelines in the cloud

Ignacio Blanquer Blanquer, Goetz Brasche, Jacek Cala, Fabrizio Gagliardi, Dennis Gannon, Hugo Hiden, Hakan Soncu, Kenji Takeda, Andrés Tomás, Simon Woodman

EMBnet.journal | May 2013

Publication

Troubling Trends in Scientific Software Use

Lucas Joppa, Richard Harper, Kenji Takeda, Kenton O'Hara, David Gavaghan, Stephen Emmott

Science | May 2013, Vol 340(6134): pp. 814-815

Publication

Optimizing Peer Review of Software Code – Response

Lucas Joppa, David Gavaghan, Richard Harper, Kenji Takeda, Stephen Emmott

Science | January 2013, Vol 341: pp. 236-237

Publication Publication

F#3.0 – Strongly-Typed Language Support for Internet-Scale Information Sources

Don Syme, Keith Battocchi, Kenji Takeda, Donna Malayeri, Jomo Fisher, Jack Hu, Tao Liu, Brian McNamara, Daniel Quirk, Matteo Taveggia, Wonseok Chae, Uladzimir Matsveyeu, Tomas Petricek, ,

MSR-TR-2012-101 | September 2012

Publication Project Project

Scientific Computation and Data Management Using Microsoft Windows Azure

Steven Johnston, Simon Cox, Kenji Takeda

Grid and Cloud Database Management | Published by Springer | 2011 | Grid and Cloud Database Management edition

Publication

Earth system modelling with Windows Workflow Foundation

M. J. Fairman, A. R. Price, G. Xue, M. Molinari, D. A. Nicole, T. M. Lenton, R. Marsh, K. Takeda, S. J. Cox, Kenji Takeda

Future Generation Computer Systems | Published by Elsevier | 2008 | Future Generation Computer Systems edition

Publication Publication

“Share and Enjoy”: Publishing Useful and Usable Scientific Models

Tom Crick, Benjamin A. Hall, Samin Ishtiaq, Kenji Takeda

Recomputability 2014 | December 2014

Publication Publication

Themes in Information-Rich Functional Programming for Internet-Scale Data Sources

Don Syme, Kenji Takeda, , Donna Malayeri,

January 2013

Publication Publication Project Project

F#3.0 – Strongly-Typed Language Support for Internet-Scale Information Sources

Don Syme, Keith Battocchi, Kenji Takeda, Donna Malayeri, Jomo Fisher, Jack Hu, Tao Liu, Brian McNamara, Daniel Quirk, Matteo Taveggia, Wonseok Chae, Uladzimir Matsveyeu, Tomas Petricek, ,

MSR-TR-2012-101 | September 2012

Publication Project Project

Performance of numerical integrators on tangential motion of DEM within implicit flow solvers

G. Jasion, J. Shrimpton, M. Danby, Kenji Takeda

Computers & Chemical Engineering | March 2011

Publication Publication

Science in the Cloud: Lessons from Three Years of Research Projects on Microsoft Azure

Dennis Gannon, Dan Fay, Daron Green, Wenming Ye, Kenji Takeda

April 2014

Publication

Enhancing research publications using Rich Interactive Narratives

Kenji Takeda, Graeme Earl, Jeremy Frey, Simon Keay, Alex D. Wade

Philosophical Transactions of the Royal Society A | December 2012

Publication Project

A generic operational simulation for early design civil unmanned aerial vehicles

Benjamin Schumann, James P. Scanlan, Kenji Takeda

The Third International Conference on Advances in System Simulation, Barcelona, Spain | October 2011

Publication

Scientific Computation and Data Management Using Microsoft Windows Azure

Steven Johnston, Simon Cox, Kenji Takeda

Grid and Cloud Database Management | Published by Springer | 2011 | Grid and Cloud Database Management edition

Publication

Multifidelity surrogate modeling of experimental and computational aerodynamic data sets

Yuichi Kuya, Kenji Takeda, Xin Zhang, Alexander Forrester

AIAA Journal | January 2011, Vol 49: pp. 289-298

Publication Publication

Computational analysis of the effect of bogie inclination angle on landing gear noise

K. J. van Mierlo, K. Takeda, E. Peers, Kenji Takeda

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference | January 2010

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference

Publication Publication

Troubling Trends in Scientific Software Use

Lucas Joppa, Richard Harper, Kenji Takeda, Kenton O'Hara, David Gavaghan, Stephen Emmott

Science | May 2013, Vol 340(6134): pp. 814-815

Publication

F#3.0 – Strongly-Typed Language Support for Internet-Scale Information Sources

Don Syme, Keith Battocchi, Kenji Takeda, Donna Malayeri, Jomo Fisher, Jack Hu, Tao Liu, Brian McNamara, Daniel Quirk, Matteo Taveggia, Wonseok Chae, Uladzimir Matsveyeu, Tomas Petricek, ,

MSR-TR-2012-101 | September 2012

Publication Project Project

Data management for all: the Institutional Data Management Blueprint Project

K. Takeda, M. Brown, S. J. Coles, L. Carr, G. P. Earl, J. G. Frey, P. J. Hancock, W. White, F. Nichols, M. Whitton, H. Gibbs, C. Fowler, P. Wake, S. Patterson, Kenji Takeda

6th International Digital Curation Conference, Chicago, US | December 2010

Publication

OSAIRIS: Lessons Learned from the Hospital-Based Implementation and Evaluation of an Open-Source Deep-Learning Model for Radiotherapy Image Segmentation

Alexandra Constantinou, Andrew Hoole, David C. Wong, G. S. Sagoo, Javier Alvarez-Valle, Kenji Takeda, Tom Griffiths, Amy Edwards, Andrew Robinson, Liam Stubbington, Niall Bolger, Yvonne Rimmer, Thiraviyam Elumalai, K. T. Jayaprakash, Richard Benson, Ian Gleeson, Rebecca Sen, Louisa Stockton, Tian Wang, Stephanie Brown, E. Gatfield, C. Sanghera, Alexandros Mourounas, Barry Evans, Anita Anthony, Renteng Hou, Marian Toomey, K. Wildschut, Aviva Grisby, Gill Barnett, Rose McMullen, Raj Jena

Clinical Oncology | October 2024

DOI Github Github Github Github Project Project

Intraoperative prediction of post-anaesthesia care unit hypotension

Konstantina Palla, Stephanie Hyland, Karen Posner, Pratik Ghosh, Bala Nair, Melissa Bristow, Yoana Paleva, Ben Williams, Christine Fong, Wil Van Cleve, Dustin R Long, Ronald Pauldine, Kenton O'Hara, Kenji Takeda, Monica S Vavilala, Kenton O'Hara

British Journal of Anaesthesia | December 2021

Online ahead of print.

Publication DOI Project

Sociodemographic and clinical features predictive of SARS-CoV-2 test positivity across healthcare visit-types

Jimmy Phuong, Stephanie Hyland, Stephen J. Mooney, Dustin R. Long, Kenji Takeda, Monica S. Vavilala, Kenton O’Hara

PLOS ONE | October 2021

Publication Project

Scalable and efficient whole-exome data processing using workflows on the cloud

J. Cala, E. Marei, Yan Xu, Kenji Takeda, P. Missier

Future Generation Computer Systems | January 2016

Publication Publication

Top Tips to Make Your Research Irreproducible

Neil P. Chue Hong, Tom Crick, Ian P. Gent, Lars Kotthoff, Kenji Takeda

April 2015

Publication

Supporting NGS Pipelines in the cloud

Ignacio Blanquer Blanquer, Goetz Brasche, Jacek Cala, Fabrizio Gagliardi, Dennis Gannon, Hugo Hiden, Hakan Soncu, Kenji Takeda, Andrés Tomás, Simon Woodman

EMBnet.journal | May 2013

Publication

Troubling Trends in Scientific Software Use

Lucas Joppa, Richard Harper, Kenji Takeda, Kenton O'Hara, David Gavaghan, Stephen Emmott

Science | May 2013, Vol 340(6134): pp. 814-815

Publication

Optimizing Peer Review of Software Code – Response

Lucas Joppa, David Gavaghan, Richard Harper, Kenji Takeda, Stephen Emmott

Science | January 2013, Vol 341: pp. 236-237

Publication Publication

Enhancing research publications using Rich Interactive Narratives

Kenji Takeda, Graeme Earl, Jeremy Frey, Simon Keay, Alex D. Wade

Philosophical Transactions of the Royal Society A | December 2012

Publication Project

Performance of numerical integrators on tangential motion of DEM within implicit flow solvers

G. Jasion, J. Shrimpton, M. Danby, Kenji Takeda

Computers & Chemical Engineering | March 2011

Publication Publication

Multifidelity surrogate modeling of experimental and computational aerodynamic data sets

Yuichi Kuya, Kenji Takeda, Xin Zhang, Alexander Forrester

AIAA Journal | January 2011, Vol 49: pp. 289-298

Publication Publication

“Share and Enjoy”: Publishing Useful and Usable Scientific Models

Tom Crick, Benjamin A. Hall, Samin Ishtiaq, Kenji Takeda

Recomputability 2014 | December 2014

Publication Publication

Science in the Cloud: Lessons from Three Years of Research Projects on Microsoft Azure

Dennis Gannon, Dan Fay, Daron Green, Wenming Ye, Kenji Takeda

April 2014

Publication

Themes in Information-Rich Functional Programming for Internet-Scale Data Sources

Don Syme, Kenji Takeda, , Donna Malayeri,

January 2013

Publication Publication Project Project

A generic operational simulation for early design civil unmanned aerial vehicles

Benjamin Schumann, James P. Scanlan, Kenji Takeda

The Third International Conference on Advances in System Simulation, Barcelona, Spain | October 2011

Publication

Evaluating design decisions in real-time using operations modelling

B. Schumann, J. P. Scanlan, K. Takeda, Kenji Takeda

2nd International Air Transport and Operations Symposium, Delft, NL, 28 - 29 Mar 2011. | March 2011

Publication

Data management for all: the Institutional Data Management Blueprint Project

K. Takeda, M. Brown, S. J. Coles, L. Carr, G. P. Earl, J. G. Frey, P. J. Hancock, W. White, F. Nichols, M. Whitton, H. Gibbs, C. Fowler, P. Wake, S. Patterson, Kenji Takeda

6th International Digital Curation Conference, Chicago, US | December 2010

Publication

Computational analysis of the effect of bogie inclination angle on landing gear noise

K. J. van Mierlo, K. Takeda, E. Peers, Kenji Takeda

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference | January 2010

Proceedings of the 16th AIAA/CEAS Aeroacoustics Conference. 16th AIAA/CEAS Aeroacoustics Conference

Publication Publication

F#3.0 – Strongly-Typed Language Support for Internet-Scale Information Sources

Don Syme, Keith Battocchi, Kenji Takeda, Donna Malayeri, Jomo Fisher, Jack Hu, Tao Liu, Brian McNamara, Daniel Quirk, Matteo Taveggia, Wonseok Chae, Uladzimir Matsveyeu, Tomas Petricek, ,

MSR-TR-2012-101 | September 2012

Publication Project Project

Scientific Computation and Data Management Using Microsoft Windows Azure

Steven Johnston, Simon Cox, Kenji Takeda

Grid and Cloud Database Management | Published by Springer | 2011 | Grid and Cloud Database Management edition

Publication

Earth system modelling with Windows Workflow Foundation

M. J. Fairman, A. R. Price, G. Xue, M. Molinari, D. A. Nicole, T. M. Lenton, R. Marsh, K. Takeda, S. J. Cox, Kenji Takeda

Future Generation Computer Systems | Published by Elsevier | 2008 | Future Generation Computer Systems edition

Publication Publication