Project InnerEye – Democratizing Medical Imaging AI

Active label cleaning for improved dataset quality under resource constraints

Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay

Nature Communications | March 2022, Vol 13(1161): pp. 1-11

Publication Github Project

Machine Learning for Auto-Segmentation in Radiotherapy Planning

K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena

The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88

Publication Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj

International Conference on Machine Learning in Medical Imaging and Analysis | June 2021

Best Presentation Award

Publication

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers

Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori

JAMA | November 2020

Publication Video Github

3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

Computerized Medical Imaging and Graphics | February 2019

Publication

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

December 2018

Publication

Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features

Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot

Physics in Medicine & Biology | November 2018, Vol 63(23)

Publication

Autofocus Layer for Semantic Segmentation

Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori

International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018

DOI Publication

Semi-Supervised Learning via Compact Latent Space Clustering

Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori

International Conference on Machine Learning (ICML) | June 2018

Publication Publication

Unsupervised domain adaptation in brain lesion segmentation with adversarial networks

Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

Information Processing in Medical Imaging (IPMI) | June 2017

Publication

Spectral Kernels for Probabilistic Analysis and Clustering of Shapes

Loic Le Folgoc, Aditya Nori, Antonio Criminisi

Information Processing in Medical Imaging (IPMI) | June 2017

DOI PDF Publication

Image Quality Transfer and Applications in Diffusion MRI

Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi

Neuroimage | March 2017

Publication

Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

Medical Image Analysis | January 2017, Vol 36: pp. 79-97

PDF DOI

Quantifying Registration Uncertainty with Sparse Bayesian Modeling

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

IEEE Transactions on Medical Imaging | December 2016

Publication

DeepMedic for Brain Tumor Segmentation

Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

Lifted Auto-Context Forests for Brain Tumour Segmentation

Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?

Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander

April 2016

Publication Project

Decision Forests, Convolutional Networks and the Models in-Between

Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi

March 2016

DOI Publication Project

Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use

Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen

Human-Computer Interaction | January 2016

Publication Publication Project

Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound

Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton

ICCV-ACVR workshop | December 2015

DOI PDF PDF Publication

Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation

Herve Lombaert, Antonio Criminisi, Nicholas Ayache

Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015

DOI PDF Publication Project

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos

Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409

Publication

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput

IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024

DOI PDF PDF

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen

Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128

Publication

Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition

J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015

Publication Publication

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Decision Forests for Segmentation of Left Atrium From 3D MRI

J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache

MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014

Publication Project

Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014

PDF DOI Publication

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014

Publication Project

Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis

Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B

European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014

Publication Project

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L

August 2014

Publication Project

Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation

Darko Zikic, B. Glocker, Antonio Criminisi

Medical Image Analysis | June 2014

Publication

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos

American Academy of Neurology Annual Meeting (AAN) | April 2014

Publication Project Project

Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI

D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Laplacian Forests: Semantic Image Segmentation by Guided Bagging

H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Recognizing Cardiac Magnetic Resonance Acquisition Planes

J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache

MIUA 2014 – Medical Image Understanding and Analysis | January 2014

Publication Project

Sparse Bayesian Registration

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Real-Time RGB-D Camera Relocalization

Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi

International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013

Publication Project Project Project

Atlas Encoding by Randomized Forests for Efficient Label Propagation

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)

Publication

Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization

D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention

Publication

Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations

Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

Publication Publication

GeoF: Geodesic Forests for Learning Coupled Predictors

P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi

Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013

ISBN: 978-0-7695-4989-7

Publication Publication Project

Decision Forests for Computer Vision and Medical Image Analysis

A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton

Published by Springer | February 2013

ISBN: 978-1-4471-4928-6

http://research.microsoft.com/en-us/projects/decisionforests/

Publication Project Project

Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans

Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui

Medical Image Analysis (MedIA) | January 2013

Publication Publication Project

Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI

E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi

Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition

Publication

Neighbourhood Approximation using Randomized Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013

Publication Project

WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity

Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl

Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013

Publication

Context-Sensitive Decision Forests for Object Detection

Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof

NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012

Neural Information Processing Systems (NIPS)

Publication Project

Discriminative Segmentation-based Evaluation through Shape Dissimilarity

Ben Glocker, Antonio Criminisi

Transactions on Medical Imaging (TMI) | December 2012

Publication

Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans

Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention

The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.

Publication Publication Project

Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model

E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

Publication Project

Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues

Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton

MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012

Publication

Current-based 4D shape analysis for the mechanical personalization of heart models

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

MICCAI workshop on Medical Computer Vision (MCV)

Publication

Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR

Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Immediate ROI Search for 3D Medical Images

K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi

MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012

Publication

Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation

Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi

ECCV 2012 – 12th European Conference on Computer Vision | October 2012

Publication Publication Project

Neighbourhood Approximation Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data

J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi

MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012

Publication Project

Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images

Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Jamie Shotton, Ender Konukoglu

Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition

Publication Project Project

Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation

Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Ender Konukoglu, Jamie Shotton

MSR-TR-2011-114 | October 2011

Publication Project

A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images

Antonio Criminisi, K. Juluru, S. Pathak

MICCAI | September 2011

Publication Project

Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences

O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker

MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011

Publication Project

Immediate Structured Image Search for Medical Images

Antonio Criminisi, A. Zisserman, K. Simonyan

MICCAI | September 2011

Publication

Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning

A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu

Information Processing in Medical Imaging (IPMI) | July 2011

Germany

Publication Project

Entangled Decision Forests and their Application for Semantic Segmentation of CT Images

A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton

Information Processing in Medical Imaging (IPMI) | July 2011

Information Processing in Medical Imaging (IPMI)

Bavaria, Germany

Publication Project

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images

S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui

SPIE Medical Imaging | February 2011

Publication

Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)

B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi

Published by Springer, February 2011

Workshop held in conjunction with MICCAI 2010, Beijing, China.

Publication

Robust Linear Registration of CT Images using Random Regression Forests

Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui

SPIE Medical Imaging | February 2011

Publication Publication Project

Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation

H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2011

Radiological Society of North America (RSNA)

Publication

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance

E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi

NeuroImage | January 2011

Publication Project

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies

Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu

Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010

Publication Publication Project

Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications

Toby Sharp, D. Robertson, Antonio Criminisi

MSR-TR-2010-72 | June 2010

Publication Download

Anatomy-Driven Medical Image Search

K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2010

Publication

Automatic Semantic Segmentation of Anatomical Structures in CT Scans

Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui

Radiological Society of North America (RSNA) | January 2010

Publication Project

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images

Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache

MICCAI | January 2010

Publication Publication Project

Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication Project Project

Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor

Antonio Criminisi, Toby Sharp, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication

Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography

Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake

FIMH 2009 [best paper award] | June 2009

best paper award

Publication Project

Surface Extraction from Binary Volumes with Higher-Order Smoothness

Victor Lempitsky

MSR-TR-2009-31 | March 2009

Publication

Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli

MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009

Publication Publication Project Project

Discriminative, Semantic Segmentation of Brain Tissue in MR Images

Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake

MICCAI 2009 | January 2009

MICCAI 2009

Publication Project

GeoS: Geodesic Image Segmentation

Antonio Criminisi, Toby Sharp, Andrew Blake

Proc. European Conference on Computer Vision (ECCV) | January 2008

ISBN: 978-3-540-88681-5

Publication Publication Publication

Active label cleaning for improved dataset quality under resource constraints

Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay

Nature Communications | March 2022, Vol 13(1161): pp. 1-11

Publication Github Project

Machine Learning for Auto-Segmentation in Radiotherapy Planning

K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena

The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88

Publication Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj

International Conference on Machine Learning in Medical Imaging and Analysis | June 2021

Best Presentation Award

Publication

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers

Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori

JAMA | November 2020

Publication Video Github

3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

Computerized Medical Imaging and Graphics | February 2019

Publication

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

December 2018

Publication

Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features

Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot

Physics in Medicine & Biology | November 2018, Vol 63(23)

Publication

Unsupervised domain adaptation in brain lesion segmentation with adversarial networks

Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

Information Processing in Medical Imaging (IPMI) | June 2017

Publication

Spectral Kernels for Probabilistic Analysis and Clustering of Shapes

Loic Le Folgoc, Aditya Nori, Antonio Criminisi

Information Processing in Medical Imaging (IPMI) | June 2017

DOI PDF Publication

Image Quality Transfer and Applications in Diffusion MRI

Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi

Neuroimage | March 2017

Publication

Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

Medical Image Analysis | January 2017, Vol 36: pp. 79-97

PDF DOI

Quantifying Registration Uncertainty with Sparse Bayesian Modeling

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

IEEE Transactions on Medical Imaging | December 2016

Publication

Lifted Auto-Context Forests for Brain Tumour Segmentation

Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

DeepMedic for Brain Tumor Segmentation

Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications

Toby Sharp, D. Robertson, Antonio Criminisi

MSR-TR-2010-72 | June 2010

Publication Download

Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography

Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake

FIMH 2009 [best paper award] | June 2009

best paper award

Publication Project

GeoS: Geodesic Image Segmentation

Antonio Criminisi, Toby Sharp, Andrew Blake

Proc. European Conference on Computer Vision (ECCV) | January 2008

ISBN: 978-3-540-88681-5

Publication Publication Publication

Active label cleaning for improved dataset quality under resource constraints

Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay

Nature Communications | March 2022, Vol 13(1161): pp. 1-11

Publication Github Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj

International Conference on Machine Learning in Medical Imaging and Analysis | June 2021

Best Presentation Award

Publication

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers

Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori

JAMA | November 2020

Publication Video Github

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

December 2018

Publication

Autofocus Layer for Semantic Segmentation

Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori

International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018

DOI Publication

Semi-Supervised Learning via Compact Latent Space Clustering

Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori

International Conference on Machine Learning (ICML) | June 2018

Publication Publication

Unsupervised domain adaptation in brain lesion segmentation with adversarial networks

Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

Information Processing in Medical Imaging (IPMI) | June 2017

Publication

Spectral Kernels for Probabilistic Analysis and Clustering of Shapes

Loic Le Folgoc, Aditya Nori, Antonio Criminisi

Information Processing in Medical Imaging (IPMI) | June 2017

DOI PDF Publication

Lifted Auto-Context Forests for Brain Tumour Segmentation

Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

DeepMedic for Brain Tumor Segmentation

Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?

Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander

April 2016

Publication Project

Decision Forests, Convolutional Networks and the Models in-Between

Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi

March 2016

DOI Publication Project

Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound

Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton

ICCV-ACVR workshop | December 2015

DOI PDF PDF Publication

Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation

Herve Lombaert, Antonio Criminisi, Nicholas Ayache

Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015

DOI PDF Publication Project

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos

Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409

Publication

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput

IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024

DOI PDF PDF

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen

Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128

Publication

Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition

J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015

Publication Publication

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Decision Forests for Segmentation of Left Atrium From 3D MRI

J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache

MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014

Publication Project

Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014

PDF DOI Publication

Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis

Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B

European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014

Publication Project

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014

Publication Project

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L

August 2014

Publication Project

Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation

Darko Zikic, B. Glocker, Antonio Criminisi

Medical Image Analysis | June 2014

Publication

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos

American Academy of Neurology Annual Meeting (AAN) | April 2014

Publication Project Project

Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI

D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Recognizing Cardiac Magnetic Resonance Acquisition Planes

J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache

MIUA 2014 – Medical Image Understanding and Analysis | January 2014

Publication Project

Laplacian Forests: Semantic Image Segmentation by Guided Bagging

H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Sparse Bayesian Registration

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Real-Time RGB-D Camera Relocalization

Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi

International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013

Publication Project Project Project

Atlas Encoding by Randomized Forests for Efficient Label Propagation

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)

Publication

Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization

D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention

Publication

Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations

Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

Publication Publication

GeoF: Geodesic Forests for Learning Coupled Predictors

P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi

Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013

ISBN: 978-0-7695-4989-7

Publication Publication Project

Decision Forests for Computer Vision and Medical Image Analysis

A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton

Published by Springer | February 2013

ISBN: 978-1-4471-4928-6

http://research.microsoft.com/en-us/projects/decisionforests/

Publication Project Project

Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans

Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui

Medical Image Analysis (MedIA) | January 2013

Publication Publication Project

WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity

Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl

Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013

Publication

Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI

E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi

Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition

Publication

Neighbourhood Approximation using Randomized Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013

Publication Project

Context-Sensitive Decision Forests for Object Detection

Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof

NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012

Neural Information Processing Systems (NIPS)

Publication Project

Discriminative Segmentation-based Evaluation through Shape Dissimilarity

Ben Glocker, Antonio Criminisi

Transactions on Medical Imaging (TMI) | December 2012

Publication

Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR

Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Neighbourhood Approximation Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans

Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention

The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.

Publication Publication Project

Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation

Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi

ECCV 2012 – 12th European Conference on Computer Vision | October 2012

Publication Publication Project

Immediate ROI Search for 3D Medical Images

K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi

MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012

Publication

Current-based 4D shape analysis for the mechanical personalization of heart models

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

MICCAI workshop on Medical Computer Vision (MCV)

Publication

Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model

E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

Publication Project

Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues

Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton

MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012

Publication

Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data

J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi

MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012

Publication Project

Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images

Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation

Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Jamie Shotton, Ender Konukoglu

Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition

Publication Project Project

Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Ender Konukoglu, Jamie Shotton

MSR-TR-2011-114 | October 2011

Publication Project

Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences

O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker

MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011

Publication Project

A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images

Antonio Criminisi, K. Juluru, S. Pathak

MICCAI | September 2011

Publication Project

Immediate Structured Image Search for Medical Images

Antonio Criminisi, A. Zisserman, K. Simonyan

MICCAI | September 2011

Publication

Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning

A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu

Information Processing in Medical Imaging (IPMI) | July 2011

Germany

Publication Project

Entangled Decision Forests and their Application for Semantic Segmentation of CT Images

A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton

Information Processing in Medical Imaging (IPMI) | July 2011

Information Processing in Medical Imaging (IPMI)

Bavaria, Germany

Publication Project

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images

S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui

SPIE Medical Imaging | February 2011

Publication

Robust Linear Registration of CT Images using Random Regression Forests

Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui

SPIE Medical Imaging | February 2011

Publication Publication Project

Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)

B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi

Published by Springer, February 2011

Workshop held in conjunction with MICCAI 2010, Beijing, China.

Publication

Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation

H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2011

Radiological Society of North America (RSNA)

Publication

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance

E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi

NeuroImage | January 2011

Publication Project

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies

Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu

Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010

Publication Publication Project

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images

Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache

MICCAI | January 2010

Publication Publication Project

Automatic Semantic Segmentation of Anatomical Structures in CT Scans

Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui

Radiological Society of North America (RSNA) | January 2010

Publication Project

Anatomy-Driven Medical Image Search

K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2010

Publication

Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication Project Project

Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor

Antonio Criminisi, Toby Sharp, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication

Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography

Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake

FIMH 2009 [best paper award] | June 2009

best paper award

Publication Project

Surface Extraction from Binary Volumes with Higher-Order Smoothness

Victor Lempitsky

MSR-TR-2009-31 | March 2009

Publication

Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli

MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009

Publication Publication Project Project

GeoS: Geodesic Image Segmentation

Antonio Criminisi, Toby Sharp, Andrew Blake

Proc. European Conference on Computer Vision (ECCV) | January 2008

ISBN: 978-3-540-88681-5

Publication Publication Publication

Active label cleaning for improved dataset quality under resource constraints

Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay

Nature Communications | March 2022, Vol 13(1161): pp. 1-11

Publication Github Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj

International Conference on Machine Learning in Medical Imaging and Analysis | June 2021

Best Presentation Award

Publication

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

December 2018

Publication

Image Quality Transfer and Applications in Diffusion MRI

Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi

Neuroimage | March 2017

Publication

Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

Medical Image Analysis | January 2017, Vol 36: pp. 79-97

PDF DOI

Quantifying Registration Uncertainty with Sparse Bayesian Modeling

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

IEEE Transactions on Medical Imaging | December 2016

Publication

Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?

Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander

April 2016

Publication Project

Decision Forests, Convolutional Networks and the Models in-Between

Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi

March 2016

DOI Publication Project

Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use

Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen

Human-Computer Interaction | January 2016

Publication Publication Project

Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound

Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton

ICCV-ACVR workshop | December 2015

DOI PDF PDF Publication

Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation

Herve Lombaert, Antonio Criminisi, Nicholas Ayache

Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015

DOI PDF Publication Project

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos

Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409

Publication

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput

IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024

DOI PDF PDF

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen

Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128

Publication

Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition

J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015

Publication Publication

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Decision Forests for Segmentation of Left Atrium From 3D MRI

J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache

MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014

Publication Project

Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014

PDF DOI Publication

Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis

Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B

European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014

Publication Project

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014

Publication Project

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L

August 2014

Publication Project

Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation

Darko Zikic, B. Glocker, Antonio Criminisi

Medical Image Analysis | June 2014

Publication

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos

American Academy of Neurology Annual Meeting (AAN) | April 2014

Publication Project Project

Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI

D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Recognizing Cardiac Magnetic Resonance Acquisition Planes

J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache

MIUA 2014 – Medical Image Understanding and Analysis | January 2014

Publication Project

Laplacian Forests: Semantic Image Segmentation by Guided Bagging

H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Sparse Bayesian Registration

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Real-Time RGB-D Camera Relocalization

Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi

International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013

Publication Project Project Project

GeoF: Geodesic Forests for Learning Coupled Predictors

P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi

Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013

ISBN: 978-0-7695-4989-7

Publication Publication Project

Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans

Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui

Medical Image Analysis (MedIA) | January 2013

Publication Publication Project

Context-Sensitive Decision Forests for Object Detection

Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof

NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012

Neural Information Processing Systems (NIPS)

Publication Project

Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR

Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues

Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton

MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012

Publication

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Jamie Shotton, Ender Konukoglu

Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition

Publication Project Project

Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Ender Konukoglu, Jamie Shotton

MSR-TR-2011-114 | October 2011

Publication Project

Entangled Decision Forests and their Application for Semantic Segmentation of CT Images

A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton

Information Processing in Medical Imaging (IPMI) | July 2011

Information Processing in Medical Imaging (IPMI)

Bavaria, Germany

Publication Project

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies

Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu

Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010

Publication Publication Project

Automatic Semantic Segmentation of Anatomical Structures in CT Scans

Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui

Radiological Society of North America (RSNA) | January 2010

Publication Project

Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication Project Project

Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor

Antonio Criminisi, Toby Sharp, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication

Discriminative, Semantic Segmentation of Brain Tissue in MR Images

Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake

MICCAI 2009 | January 2009

MICCAI 2009

Publication Project

Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli

MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009

Publication Publication Project Project

GeoS: Geodesic Image Segmentation

Antonio Criminisi, Toby Sharp, Andrew Blake

Proc. European Conference on Computer Vision (ECCV) | January 2008

ISBN: 978-3-540-88681-5

Publication Publication Publication

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use

Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen

Human-Computer Interaction | January 2016

Publication Publication Project

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos

Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409

Publication

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen

Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128

Publication

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014

Publication Project

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L

August 2014

Publication Project

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos

American Academy of Neurology Annual Meeting (AAN) | April 2014

Publication Project Project

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications

Toby Sharp, D. Robertson, Antonio Criminisi

MSR-TR-2010-72 | June 2010

Publication Download

Active label cleaning for improved dataset quality under resource constraints

Melanie Bernhardt, Daniel Coelho de Castro, Ryutaro Tanno, Anton Schwaighofer, Kerem C. Tezcan, Miguel Monteiro, Shruthi Bannur, Matthew P. Lungren, Aditya Nori, Ben Glocker, Javier Alvarez-Valle, Ozan Oktay

Nature Communications | March 2022, Vol 13(1161): pp. 1-11

Publication Github Project

Machine Learning for Auto-Segmentation in Radiotherapy Planning

K Harrison, H Pullen, C Welsh, Ozan Oktay, Javier Alvarez-Valle, R Jena

The Royal College of Radiologists – Clinical Oncology | January 2022, Vol 34(2): pp. 74-88

Publication Project

Evaluation of Deep Learning to Augment Image Guided Radiotherapy for Head and Neck and Prostate Cancers

Ozan Oktay, Jay Nanavati, Anton Schwaighofer, David Carter, Melissa Bristow, Ryutaro Tanno, Gill Barnett, David Noble, Yvonne Rimmer, Rajesh Jena, Ben Glocker, Kenton O'Hara, Christopher Bishop, Javier Alvarez-Valle, Aditya Nori

JAMA | November 2020

Publication Video Github

3D Convolutional Neural Networks for Tumor Segmentation using Long-range 2D Context

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

Computerized Medical Imaging and Graphics | February 2019

Publication

Autosegmentation of prostate anatomy for radiation treatment planning using deep decision forests of radiomic features

Meghan W Macomber, Mark Phillips, Ivan Tarapov, Rajesh Jena, Aditya Nori, David Carter, Loic Le Folgoc, Antonio Criminisi, Matthew J Nyflot

Physics in Medicine & Biology | November 2018, Vol 63(23)

Publication

Image Quality Transfer and Applications in Diffusion MRI

Daniel C. Alexander, Darko Zikic, Aurobrata Gosh, Ryutaro Tanno, Viktor Wottschel, Jiaying Zhang, Enrico Kaden, Tim B. Dirby, Stamatios N. Sotiropoulos, Hui Zhang, Antonio Criminisi

Neuroimage | March 2017

Publication

Sparse Bayesian registration of medical images for self-tuning of parameters and spatially adaptive parametrization of displacements.

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

Medical Image Analysis | January 2017, Vol 36: pp. 79-97

PDF DOI

Quantifying Registration Uncertainty with Sparse Bayesian Modeling

Loic Le Folgoc, Hervé Delingette, Antonio Criminisi, Nicholas Ayache

IEEE Transactions on Medical Imaging | December 2016

Publication

Assessing Multiple Sclerosis with Kinect: Designing Computer Vision Systems for Real-World Use

Cecily Morrison, Kit Huckvale, Bob Corish, Jonas Dorn, Peter Kontschieder, Kenton O'Hara, ASSESS MS Team, Antonio Criminisi, Abigail Sellen

Human-Computer Interaction | January 2016

Publication Publication Project

Prediction of expanded disability status scale subscores of motor dysfunction in multiple sclerosis using depth-sensing computer vision

M. D'Souza, J. Burggraaff, P. Kontschieder, J. Dorn, C.P. Kamm, S. Seinheimer, P. Tewarie, C. Morrison, Abigail Sellen, Antonio Criminisi, F. Dahlke, B Uitdehaag, L. Kappos

Multiple Sclerosis Journal | October 2015, Vol 21: pp. 409-409

Publication

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Bjoern H. Menze, Andras Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth Gerstner, Marc-Andre Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Cagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, Jose Antonio Mariz, Raphael Meier, Sergio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael Ryan, Duygu Sarikaya, Lawrence Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno Sousa, Nagesh K. Subbanna, Gabor Szekely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, D. Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput

IEEE Transactions on Medical Imaging | September 2015, Vol 34(10): pp. 1993-2024

DOI PDF PDF

Video-based paired-comparison ranking: a validation tool for fine-grained measurements of motor dysfunction in multiple sclerosis

J. Burggraaff, J. Dorn, M. D'Souza, C. P. Kamm, P. Tewarie, P. Kontschieder, Cecily Morrison, A. Criminisi, F. Dahlke, L. Kappos, B. M. J. Uitdehaag, Antonio Criminisi , Abigail Sellen

Multiple Sclerosis Journal | September 2015, Vol 21: pp. 127-128

Publication

Finetuned convolutional neural nets for cardiac MRI acquisition plane recognition

J. Margeta, Antonio Criminisi, R. Cabrera Lozoya, D. C. Lee, N. Ayache

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | June 2015

Publication Publication

Touchless interaction in surgical settings

Tom Carrell, Helena Mentis, Graeme Penney, Antonio Criminisi, Kenton O'Hara, Abigail Sellen, Mark Rouncefield, Neville Dastur, Varnavas, Bob Corish

Communications of the ACM | December 2014

Publication Video Project

Video-based paired-comparison ranking: A validation tool for fine grained measures of motor dysfunction in multiple sclerosis

Burggraaf J, D Souza M, Dorn J, Kamm C, Tewarie P, Kontschieder P, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Kappos L, Uitdehaag B

European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) | September 2014

Publication Project

Encoding Atlases by Randomized Classification Forests for Efficient Multi-Atlas Label Propagation

Darko Zikic, B. Glocker, Antonio Criminisi

Medical Image Analysis | June 2014

Publication

Regression Forests for Efficient Anatomy Detection and Localization in Computed Tomography Scans

Antonio Criminisi, Duncan Robertson, Ender Konukoglu, Jamie Shotton, S. Pathak, S. White, K. Siddiqui

Medical Image Analysis (MedIA) | January 2013

Publication Publication Project

WESD – Weighted Spectral Distance for Measuring Shape Dissimilarity

Ender Konukoglu, Ben Glocker, Antonio Criminisi, Kilian M. Pohl

Transactions Pattern Analysis and Machine Intelligence (PAMI) | January 2013

Publication

Discriminative Segmentation-based Evaluation through Shape Dissimilarity

Ben Glocker, Antonio Criminisi

Transactions on Medical Imaging (TMI) | December 2012

Publication

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel Magnetic Resonance

E. Geremia, O. Clatz, B. H. Menze, E. Konukoglu, A. Criminisi, N. Ayache, Antonio Criminisi

NeuroImage | January 2011

Publication Project

Hierarchical Analysis of Visual COVID-19 Features from Chest Radiographs

Shruthi Bannur, Ozan Oktay, Melanie Bernhardt, Anton Schwaighofer, Rajesh Jena, Besmira Nushi, Sharan Wadhwani, Aditya Nori, Kal Natarajan, Shazad Ashraf, Javier Alvarez-Valle, Daniel Coelho de Castro

ICML 2021 Workshop on Interpretable Machine Learning in Healthcare | July 2021

PDF Preprint Project Project Project

Addressing the Exorbitant Cost of Labeling Medical Images with Active Learning

Saba Rahimi, Ozan Oktay, Javier Alvarez-Valle, Sujeeth Bharadwaj

International Conference on Machine Learning in Medical Imaging and Analysis | June 2021

Best Presentation Award

Publication

Secure Medical Image Analysis with CrypTFlow

Javier Alvarez-Valle, Pratik Bhatu, Nishanth Chandran, Divya Gupta, Aditya Nori, Aseem Rastogi, Mayank Rathee, Rahul Sharma, Shubham Ugare

NeurIPS PPML Workshop | December 2020

Publication Project

Autofocus Layer for Semantic Segmentation

Yao Qin, Konstantinos Kamnitsas, Siddharth Ancha, Jay Nanavati, Garrison W. Cottrell, Antonio Criminisi, Aditya Nori

International Conference on Medical Image Computing & Computer Assisted Intervention (MICCAI) | September 2018

DOI Publication

Semi-Supervised Learning via Compact Latent Space Clustering

Konstantinos Kamnitsas, Daniel C. Castro, Loic Le Folgoc, Ian Walker, Ryutaro Tanno, Daniel Rueckert, Ben Glocker, Antonio Criminisi, Aditya Nori

International Conference on Machine Learning (ICML) | June 2018

Publication Publication

Unsupervised domain adaptation in brain lesion segmentation with adversarial networks

Konstantinos Kamnitsas, Christian Baumgartner, Christian Ledig, Virginia F.J. Newcombe, Joanna P. Simpson, Andrew D. Kane, David K. Menon, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

Information Processing in Medical Imaging (IPMI) | June 2017

Publication

Spectral Kernels for Probabilistic Analysis and Clustering of Shapes

Loic Le Folgoc, Aditya Nori, Antonio Criminisi

Information Processing in Medical Imaging (IPMI) | June 2017

DOI PDF Publication

Lifted Auto-Context Forests for Brain Tumour Segmentation

Loic Le Folgoc, Aditya Nori, Siddharth Ancha, Antonio Criminisi

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

DeepMedic for Brain Tumor Segmentation

Konstantinos Kamnitsas, Enzo Ferrante, Sarah Parisot, Christian Ledig, Aditya Nori, Antonio Criminisi, Daniel Rueckert, Ben Glocker

MICCAI Brain Lesion Workshop | October 2016

DOI PDF Publication

Improving Indoor Mobility of the Visually Impaired with Depth-Based Spatial Sound

Simon Blessenohl, Cecily Morrison, Antonio Criminisi, Jamie Shotton

ICCV-ACVR workshop | December 2015

DOI PDF PDF Publication

Spectral Forests: Learning of Surface Data, Application to Cortical Parcellation

Herve Lombaert, Antonio Criminisi, Nicholas Ayache

Medical Image Computing and Computer Assisted Intervention (MICCAI) | October 2015

DOI PDF Publication Project

Decision Forests for Segmentation of Left Atrium From 3D MRI

J. Margeta, K. McLeod, Antonio Criminisi, N. Ayache

MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM) | October 2014

Publication Project

Classifier-Based Multi-atlas Label Propagation with Test-Specific Atlas Weighting for Correspondence-Free Scenarios

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (bigMCV) | September 2014

PDF DOI Publication

Quantifying Progression of Multiple Sclerosis via Classification of Depth Videos

Peter Kontschieder, Jonas F. Dorn, Cecily Morrison, Bob Corish, Darko Zikic, Abigail Sellen, Marcus DSouza, Christian P. Kamm, Jessica Burggraaff, Prejaas Tewarie, Thomas Vogel, Michael Azzarito, Ben Glocker, Peter Chin, Frank Dahlke, Chris Polman, Ludwig Kappos, Bernard Uitdehaag, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | September 2014

Publication Project

Assessment of Disability in Multiple Sclerosis Using the Kinect-Camera System: A Proof-of-Concept Study

Marcus D Souza, Christian Kamm, Jessica Burggraaff, Prejass Tewarie, Ben Glocker, Jonas Dorn, Thomas Vogel, Cecily Morrison, Abigail Sellen, Matthias Machacek, Peter Chin, Bernard Uitdehaag, Antonio Criminisi, Frank Dahlke, Chris Polman, Ludwig Kappos

American Academy of Neurology Annual Meeting (AAN) | April 2014

Publication Project Project

Image Quality Transfer via Random Forest Regression: Applications in Diffusion MRI

D. Alexander, Darko Zikic, H. Zhang, Antonio Criminisi

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Recognizing Cardiac Magnetic Resonance Acquisition Planes

J. Margeta, Antonio Criminisi, D. C. Lee, N. Ayache

MIUA 2014 – Medical Image Understanding and Analysis | January 2014

Publication Project

Laplacian Forests: Semantic Image Segmentation by Guided Bagging

H. Lombaert, D. Zikic, Antonio Criminisi, N. Ayache, Darko Zikic

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Sparse Bayesian Registration

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI 2014 – Intl Conf. on Medical Image Computing and Computer Assisted Intervention | January 2014

Publication Project

Real-Time RGB-D Camera Relocalization

Ben Glocker, Shahram Izadi, Jamie Shotton, Antonio Criminisi

International Symposium on Mixed and Augmented Reality (ISMAR) | October 2013

Publication Project Project Project

Atlas Encoding by Randomized Forests for Efficient Label Propagation

Darko Zikic, Ben Glocker, Antonio Criminisi

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award) | September 2013

MICCAI 2013 – 16th Intl Conf. on Medical Image Computing and Computer Assisted Intervention (MICCAI Young Scientist Award)

Publication

Modality Propagation: Coherent Synthesis of Subject-Specific Scans with Data-Driven Regularization

D. Ye, Darko Zikic, Ben Glocker, Antonio Criminisi, E. Konukoglu

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention

Publication

Vertebrae Localization in Pathological Spine CT via Dense Classification from Sparse Annotations

Ben Glocker, Darko Zikic, Ender Konukoglu, David R. Haynor, Antonio Criminisi

MICCAI 2013 – 16th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2013

Publication Publication

GeoF: Geodesic Forests for Learning Coupled Predictors

P. Kontschieder, Pushmeet Kohli, Jamie Shotton, Antonio Criminisi

Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on | June 2013

ISBN: 978-0-7695-4989-7

Publication Publication Project

Neighbourhood Approximation using Randomized Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

Medical Image Analysis (Medical Image Analysis – MICCAI 2013 Best Paper Award) | January 2013

Publication Project

Context-Sensitive Decision Forests for Object Detection

Peter Kontschieder, Samuel Rota Bulo, Antonio Criminisi, Pushmeet Kohli, Marcello Pelillo, Horst Bischof

NIPS’12 Proceedings of the 25th International Conference on Neural Information Processing Systems | December 2012

Neural Information Processing Systems (NIPS)

Publication Project

Decision Forests for Tissue-specific Segmentation of High-grade Gliomas in Multi-channel MR

Antonio Criminisi, Darko Zikic, Ender Konukoglu, Ben Glocker, Jamie Shotton

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Neighbourhood Approximation Forests

Ender Konukoglu, Ben Glocker, Darko Zikic, Antonio Criminisi

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

Publication Publication Project

Automatic Localization and Identification of Vertebrae in Arbitrary Field-of-View CT Scans

Ben Glocker, J. Feulner, Antonio Criminisi, D. R. Haynor, Ender Konukoglu

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention | October 2012

MICCAI 2012 – 15th International Conference on Medical Image Computing and Computer Assisted Intervention

The pdf is a modified version of the original publication. Typos in Eq. 1 and 3 have been corrected.

Publication Publication Project

Joint Classification-Regression Forests for Spatially Structured Multi-Object Segmentation

Ben Glocker, Olivier Pauly, Ender Konukoglu, Antonio Criminisi

ECCV 2012 – 12th European Conference on Computer Vision | October 2012

Publication Publication Project

Immediate ROI Search for 3D Medical Images

K. Simonyan, M. Modat, S. Ourselin, A. Criminisi, A. Zisserman, Antonio Criminisi

MICCAI workshop on Medical Content-based Retrieval for Clinical Decision Support (MCBR-CDS) | October 2012

Publication

Current-based 4D shape analysis for the mechanical personalization of heart models

L. Le Folgoc, H. Delingette, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

MICCAI workshop on Medical Computer Vision (MCV)

Publication

Brain tumor cell density estimation from multi-modal MR images based on a synthetic tumor growth model

E. Geremia, B. Menze, M. Prastawa, M.-A. Weber, Antonio Criminisi, N. Ayache

MICCAI workshop on Medical Computer Vision (MCV) | October 2012

Publication Project

Context-sensitive Classification Forests for Segmentation of Brain Tumor Tissues

Antonio Criminisi, Darko Zikic, Ben Glocker, Jamie Shotton

MICCAI 2012 Challenge on Multimodal Brain Tumor Segmentation | October 2012

Publication

Layered Spatio-Temporal Forests for Left Ventricle Segmentation from 4D Cardiac MRI Data

J. Margeta, E. Geremia, A. Criminisi, N. Ayache, Antonio Criminisi

MICCAI workshop: Statistical Atlases and Computational Models of the Heart (STACOM) | September 2012

Publication Project

Comparative Analysis of Semantic Localization Accuracies Between Adult and Pediatric DICOM CT Images

Duncan Robertson, Sayan D. Pathak, Antonio Criminisi, Steve White, David Haynor, Oliver Chen, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Linking DICOM Pixel Data with Radiology Reports Using Automatic Semantic Annotation

Sayan D. Pathak, Woojin Kim, Indeera Munasinghe, Antonio Criminisi, Steve White, Khan Siddiqui

SPIE Medical Imaging | January 2012

Publication Project

Fast Multiple Organs Detection and Localization in Whole-Body MR Dixon Sequences

O. Pauly, B. Glocker, A. Criminisi, N. Navab, D. Mateus, A. Martinez Moller, S. Nekolla, Antonio Criminisi, Ben Glocker

MICCAI 2011 – 14th International Conference on Medical Image Computing and Computer Assisted Intervention | September 2011

Publication Project

A Discriminative-Generative Model for Detecting Intravenous Contrast in CT Images

Antonio Criminisi, K. Juluru, S. Pathak

MICCAI | September 2011

Publication Project

Immediate Structured Image Search for Medical Images

Antonio Criminisi, A. Zisserman, K. Simonyan

MICCAI | September 2011

Publication

Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active learning

A. Montillo, Z. Tu, Antonio Criminisi, J. E. Iglesias, E. Konukoglu, Ender Konukoglu

Information Processing in Medical Imaging (IPMI) | July 2011

Germany

Publication Project

Entangled Decision Forests and their Application for Semantic Segmentation of CT Images

A. Montillo, J. E. Iglesias, John Winn, Antonio Criminisi, D. Metaxas, Jamie Shotton

Information Processing in Medical Imaging (IPMI) | July 2011

Information Processing in Medical Imaging (IPMI)

Bavaria, Germany

Publication Project

Exploring the potential for touchless interaction in image-guided interventional radiology

Kenton O'Hara, Abigail Sellen, Antonio Criminisi

Proceedings of CHI 2011 | May 2011

Honourable Mention, Best of CHI Awards

Publication Project Project

Automatic Semantic Annotation and Validation of Anatomy in DICOM CT Images

S. Pathak, Antonio Criminisi, S. White, I. Munasinghe, B. Sparks, D. Robertson, K. Siddiqui

SPIE Medical Imaging | February 2011

Publication

Robust Linear Registration of CT Images using Random Regression Forests

Ender Konukoglu, Antonio Criminisi, Sayan Pathak, Duncan Robertson, Steve White, David Haynor, Khan Siddiqui

SPIE Medical Imaging | February 2011

Publication Publication Project

Mobile Cloud-Computer-aided Diagnosis System for Colon Cancer Screening with Motion-based Virtual Colonoscopic Navigation

H. Yoshida, Y. Wu, W. Cai, J. J. Nappi, M. Hirano, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2011

Radiological Society of North America (RSNA)

Publication

Regression Forests for Efficient Anatomy Detection and Localization in CT Studies

Antonio Criminisi, Jamie Shotton, D. Robertson, Ender Konukoglu

Medical Computer Vision 2010: Recognition Techniques and Applications in Medical Imaging, MICCAI workshop | September 2010

Publication Publication Project

Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images

Ezequiel Geremia, Bjoern H. Menze, Oilivierr Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache

MICCAI | January 2010

Publication Publication Project

Automatic Semantic Segmentation of Anatomical Structures in CT Scans

Antonio Criminisi, A. Montillo, Jamie Shotton, S. Pathak, John Winn, K. Siddiqui

Radiological Society of North America (RSNA) | January 2010

Publication Project

Anatomy-Driven Medical Image Search

K. Simonyan, A. Zisserman, A. Criminisi, Antonio Criminisi

Radiological Society of North America (RSNA) | January 2010

Publication

Automatic Semantic Parsing of CT Scans via Multiple Randomized Decision Trees

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication Project Project

Interactive Geodesic Segmentation of n-Dimensional Medical Images on the Graphics Processor

Antonio Criminisi, Toby Sharp, Khan Siddiqui

Radiological Society of North America (RSNA) | December 2009

Publication Publication

Random Forest Classification for Automatic Delineation of Myocardium in Real-time 3D Echocardiography

Victor Lempitsky, Michael Veroek, Alison Noble, Andrew Blake

FIMH 2009 [best paper award] | June 2009

best paper award

Publication Project

Discriminative, Semantic Segmentation of Brain Tissue in MR Images

Zhao Yi, Antonio Criminisi, Jamie Shotton, Andrew Blake

MICCAI 2009 | January 2009

MICCAI 2009

Publication Project

Decision Forests with Long-Range Spatial Context for Organ Localization in CT Volumes

Antonio Criminisi, Jamie Shotton, Stefano Bucciarelli

MICCAI workshop on Probabilistic Models for Medical Image Analysis (MICCAI-PMMIA) | January 2009

Publication Publication Project Project

GeoS: Geodesic Image Segmentation

Antonio Criminisi, Toby Sharp, Andrew Blake

Proc. European Conference on Computer Vision (ECCV) | January 2008

ISBN: 978-3-540-88681-5

Publication Publication Publication

Deep Learning with Mixed Supervision for Brain Tumor Segmentation

Pawel Mlynarski, Herve' Delingette, Antonio Criminisi, Nicholas Ayache

December 2018

Publication

Generalisability of Image Quality Transfer: Can we approximate in-vivo human brains from dead monkey brains?

Aurobrata Ghosh, V. Wottschel, Enrico Kaden, H. Zhang, Stamatios N. Sotiropoulos, D. Zikic, T. B. Dyrby, Antonio Criminisi, Daniel C. Alexander

April 2016

Publication Project

Decision Forests, Convolutional Networks and the Models in-Between

Yani Ioannou, Duncan Robertson, D. Zikic, Peter Kontschieder, Jamie Shotton, Matthew Brown, Antonio Criminisi

March 2016

DOI Publication Project

Infrared depth sensor based automated classification of motor dysfunction in multiple sclerosis – a proof-of-concept study

Burggraaf J, Kamm C, Tewarie P, Peter Kontschieder, Dorn J, Cecily Morrison, Vogel T, Abigail Sellen, Machacek M, Chin P, Antonio Criminisi, Dahlke F, Uitdehaag B, Kappos L

August 2014

Publication Project

Decision Forests for Computer Vision and Medical Image Analysis

A. Criminisi, J. Shotton, Antonio Criminisi, Jamie Shotton

Published by Springer | February 2013

ISBN: 978-1-4471-4928-6

http://research.microsoft.com/en-us/projects/decisionforests/

Publication Project Project

Classification Forests for Semantic Segmentation of Brain Lesions in Multi-Channel MRI

E. Geremia, D. Zikic, E. Konukoglu, O.M. Thomas, S.J. Price, T. Das, R. Jena, N. Ayache, A. Criminisi, O. Clatz, B.H. Menze, B. Glocker, J. Shotton, Darko Zikic, Jamie Shotton, Ben Glocker, Antonio Criminisi

Decision Forests for Computer Vision and Medical Image Analysis | Published by Springer | 2013 | Decision Forests for Computer Vision and Medical Image Analysis edition

Publication

Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Jamie Shotton, Ender Konukoglu

Foundations and Trends® in Computer Graphics and Vision | Published by NOW Publishers | 2012, Vol 7 | Foundations and Trends® in Computer Graphics and Vision: Vol. 7: No 2-3, pp 81-227 edition

Publication Project Project

Decision Forests for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning

Antonio Criminisi, Ender Konukoglu, Jamie Shotton

MSR-TR-2011-114 | October 2011

Publication Project

Volume Rendering on Server GPUs for Enterprise-Scale Medical Applications

Toby Sharp, D. Robertson, Antonio Criminisi

MSR-TR-2010-72 | June 2010

Publication Download

Surface Extraction from Binary Volumes with Higher-Order Smoothness

Victor Lempitsky

MSR-TR-2009-31 | March 2009

Publication

Medical Computer Vision: recognition techniques and applications in medical imaging (1st MICCAI-MCV workshop)

B. Menze, G. Langs, Z. Tu, A. Criminisi, Antonio Criminisi

Published by Springer, February 2011

Workshop held in conjunction with MICCAI 2010, Beijing, China.

Publication